HL_5GAK_078

3D structure

PDB id

5GAK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

GUAUUC

Length

6 nucleotides

Bulged bases

5GAK|1|4|U|125, 5GAK|1|4|U|127, 5GAK|1|4|U|128

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5GAK_078 not in the Motif Atlas

Homologous match to HL_5TBW_076

Geometric discrepancy: 0.4749

The information below is about HL_5TBW_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_45177.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

5GAK|1|4|G|124
5GAK|1|4|U|125
5GAK|1|4|A|126
5GAK|1|4|U|127
5GAK|1|4|U|128
5GAK|1|4|C|129

Current chains

Chain 4

5.8S rRNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA