HL_5GAK_080

3D structure

PDB id

5GAK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

ACUUUUAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5GAK_080 not in the Motif Atlas

Homologous match to HL_5IBB_210

Geometric discrepancy: 0.3284

The information below is about HL_5IBB_210

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_06059.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

51

Unit IDs

5GAK|1|A|A|31
5GAK|1|A|C|32
5GAK|1|A|U|33
5GAK|1|A|U|34
5GAK|1|A|U|35
5GAK|1|A|U|36
5GAK|1|A|A|37
5GAK|1|A|A|38
5GAK|1|A|U|39

Current chains

Chain A

The A-site tRNA was modeled based on an E. coli tRNA-Lys

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA