HL_5GAK_084
3D structure
- PDB id
- 5GAK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.88 Å
Loop
- Sequence
- GUUCGAGUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5GAK_084 not in the Motif Atlas
- Homologous match to HL_4V8N_145
- Geometric discrepancy: 0.2633
- The information below is about HL_4V8N_145
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.9
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
5GAK|1|B|G|53
5GAK|1|B|U|54
5GAK|1|B|U|55
5GAK|1|B|C|56
5GAK|1|B|G|57
5GAK|1|B|A|58
5GAK|1|B|G|59
5GAK|1|B|U|60
5GAK|1|B|C|61
Current chains
- Chain B
- P-site tRNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain C
- 60S ribosomal protein L42-A
- Chain M
- 60S ribosomal protein L11-A
- Chain q
- Eukaryotic translation initiation factor 5A-1
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