HL_5GAK_085

3D structure

PDB id

5GAK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

CCUUGUUG

Length

8 nucleotides

Bulged bases

5GAK|1|1|U|3351, 5GAK|1|1|U|3354, 5GAK|1|1|U|3355

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5GAK|1|1|C|3349
5GAK|1|1|C|3350
5GAK|1|1|U|3351
5GAK|1|1|U|3352
5GAK|1|1|G|3353
5GAK|1|1|U|3354
5GAK|1|1|U|3355
5GAK|1|1|G|3356

Current chains

Chain 1

25S rRNA

Nearby chains

Chain W

60S ribosomal protein L22-A