HL_5GAK_086
3D structure
- PDB id
- 5GAK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.88 Å
Loop
- Sequence
- CAGUUGGUAG
- Length
- 10 nucleotides
- Bulged bases
- 5GAK|1|A|U|17, 5GAK|1|A|G|18, 5GAK|1|A|G|19, 5GAK|1|A|U|20
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5GAK_086 not in the Motif Atlas
- Homologous match to HL_7MRL_001
- Geometric discrepancy: 0.3467
- The information below is about HL_7MRL_001
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20811.4
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 14
Unit IDs
5GAK|1|A|C|13
5GAK|1|A|A|14
5GAK|1|A|G|15
5GAK|1|A|U|16
5GAK|1|A|U|17
5GAK|1|A|G|18
5GAK|1|A|G|19
5GAK|1|A|U|20
5GAK|1|A|A|21
5GAK|1|A|G|22
Current chains
- Chain A
- The A-site tRNA was modeled based on an E. coli tRNA-Lys
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain B
- Transfer RNA; tRNA
- Chain s
- 60S ribosomal protein L10
Coloring options: