HL_5GAK_087

3D structure

PDB id

5GAK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

CAUUCG

Length

6 nucleotides

Bulged bases

5GAK|1|1|A|2569, 5GAK|1|1|U|2570, 5GAK|1|1|U|2571, 5GAK|1|1|C|2572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5GAK|1|1|C|2568
5GAK|1|1|A|2569
5GAK|1|1|U|2570
5GAK|1|1|U|2571
5GAK|1|1|C|2572
5GAK|1|1|G|2573

Current chains

Chain 1

25S rRNA

Nearby chains

Chain b

60S ribosomal protein L27-A