HL_5GM6_004
3D structure
- PDB id
- 5GM6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the activated spliceosome (Bact complex) at 3.5 angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UGCAUAA
- Length
- 7 nucleotides
- Bulged bases
- 5GM6|1|E|U|74
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5GM6_004 not in the Motif Atlas
- Homologous match to HL_6ASO_001
- Geometric discrepancy: 0.3276
- The information below is about HL_6ASO_001
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_34789.4
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 399
Unit IDs
5GM6|1|E|U|70
5GM6|1|E|G|71
5GM6|1|E|C|72
5GM6|1|E|A|73
5GM6|1|E|U|74
5GM6|1|E|A|75
5GM6|1|E|A|76
Current chains
- Chain E
- Saccharomyces cerevisiae strain T.52_2H chromosome XII sequence
Nearby chains
- Chain A
- Pre-mRNA-splicing factor 8
- Chain D
- U5 spliceosomal RNA; U5 snRNA
- Chain N
- Pre-mRNA
- Chain O
- Pre-mRNA-splicing factor PRP46
- Chain S
- Pre-mRNA-splicing factor CWC15
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