HL_5H4P_024

3D structure

PDB id

5H4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

5H4P|1|1|U|1081

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5H4P_024 not in the Motif Atlas

Homologous match to HL_8C3A_024

Geometric discrepancy: 0.2216

The information below is about HL_8C3A_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

5H4P|1|1|C|1076
5H4P|1|1|U|1077
5H4P|1|1|U|1078
5H4P|1|1|A|1079
5H4P|1|1|A|1080
5H4P|1|1|U|1081
5H4P|1|1|U|1082
5H4P|1|1|G|1083

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain D

60S ribosomal protein L5

Chain T

60S ribosomal protein L21-A

Chain b

60S ribosomal protein L29