HL_5H4P_042

3D structure

PDB id

5H4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

5H4P|1|1|U|1925

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5H4P_042 not in the Motif Atlas

Geometric match to HL_7RQB_042

Geometric discrepancy: 0.106

The information below is about HL_7RQB_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_03562.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

56

Unit IDs

5H4P|1|1|C|1923
5H4P|1|1|U|1924
5H4P|1|1|U|1925
5H4P|1|1|C|1926
5H4P|1|1|G|1927
5H4P|1|1|G|1928

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain p

60S ribosomal protein L43-A