HL_5H4P_069

3D structure

PDB id

5H4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

CGGAAAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5H4P_069 not in the Motif Atlas

Homologous match to HL_5TBW_069

Geometric discrepancy: 0.1651

The information below is about HL_5TBW_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_24596.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

7

Unit IDs

5H4P|1|1|C|3240
5H4P|1|1|G|3241
5H4P|1|1|G|3242
5H4P|1|1|A|3243
5H4P|1|1|A|3244
5H4P|1|1|A|3245
5H4P|1|1|G|3246
5H4P|1|1|G|3247

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain O

60S ribosomal protein L16-A