HL_5H5U_002
3D structure
- PDB id
- 5H5U (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mechanistic insights into the alternative translation termination by ArfA and RF2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.01 Å
Loop
- Sequence
- GCUCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5H5U_002 not in the Motif Atlas
- Homologous match to HL_6CFJ_107
- Geometric discrepancy: 0.0925
- The information below is about HL_6CFJ_107
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 29
Unit IDs
5H5U|1|5|G|31
5H5U|1|5|C|32
5H5U|1|5|U|33
5H5U|1|5|C|34
5H5U|1|5|A|35
5H5U|1|5|U|36
5H5U|1|5|A|37
5H5U|1|5|A|38
5H5U|1|5|C|39
Current chains
- Chain 5
- P-site tRNA
Nearby chains
- Chain 4
- Peptide chain release factor 2
- Chain 7
- mRNA
- Chain h
- Small subunit ribosomal RNA; SSU rRNA
- Chain p
- 30S ribosomal protein S9
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