HL_5H5U_014

3D structure

PDB id

5H5U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanistic insights into the alternative translation termination by ArfA and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

5H5U|1|A|G|329, 5H5U|1|A|A|330, 5H5U|1|A|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5H5U_014 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.0762

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

5H5U|1|A|G|327
5H5U|1|A|U|328
5H5U|1|A|G|329
5H5U|1|A|A|330
5H5U|1|A|C|331
5H5U|1|A|A|332
5H5U|1|A|G|333
5H5U|1|A|C|334
5H5U|1|A|C|335

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain V

50S ribosomal protein L24