HL_5H5U_039

3D structure

PDB id

5H5U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanistic insights into the alternative translation termination by ArfA and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

5H5U|1|A|A|1453, 5H5U|1|A|C|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5H5U_039 not in the Motif Atlas

Homologous match to HL_5J7L_169

Geometric discrepancy: 0.1027

The information below is about HL_5J7L_169

Detailed Annotation

Mini UNCG with extended bulge

Broad Annotation

Mini UNCG with extended bulge

Motif group

HL_22622.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5H5U|1|A|C|1451
5H5U|1|A|G|1452
5H5U|1|A|A|1453
5H5U|1|A|C|1454
5H5U|1|A|G|1455
5H5U|1|A|G|1456
5H5U|1|A|U|1457
5H5U|1|A|U|1458
5H5U|1|A|G|1459

Current chains

Chain A

23S rRNA

Nearby chains

Chain O

50S ribosomal protein L17