3D structure

PDB id
5H5U (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mechanistic insights into the alternative translation termination by ArfA and RF2
Experimental method
ELECTRON MICROSCOPY
Resolution
3.01 Å

Loop

Sequence
CGUGAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5H5U_066 not in the Motif Atlas
Homologous match to HL_5J7L_196
Geometric discrepancy: 0.0728
The information below is about HL_5J7L_196
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.7
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
349

Unit IDs

5H5U|1|A|C|2594
5H5U|1|A|G|2595
5H5U|1|A|U|2596
5H5U|1|A|G|2597
5H5U|1|A|A|2598
5H5U|1|A|G|2599

Current chains

Chain A
23S rRNA

Nearby chains

Chain 5
Transfer RNA; tRNA
Chain C
50S ribosomal protein L2

Coloring options:


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