HL_5H5U_080

3D structure

PDB id

5H5U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanistic insights into the alternative translation termination by ArfA and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

5H5U|1|h|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5H5U_080 not in the Motif Atlas

Homologous match to HL_5J7L_006

Geometric discrepancy: 0.0591

The information below is about HL_5J7L_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

5H5U|1|h|G|259
5H5U|1|h|G|260
5H5U|1|h|U|261
5H5U|1|h|A|262
5H5U|1|h|A|263
5H5U|1|h|C|264
5H5U|1|h|G|265
5H5U|1|h|G|266
5H5U|1|h|C|267

Current chains

Chain h

16S rRNA

Nearby chains

Chain 1

30S ribosomal protein S20

Chain x

30S ribosomal protein S17