HL_5HAU_049

3D structure

PDB id

5HAU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

5HAU|1|1A|A|2051, 5HAU|1|1A|A|2052, 5HAU|1|1A|G|2053

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5HAU_049 not in the Motif Atlas

Homologous match to HL_7RQB_050

Geometric discrepancy: 0.0458

The information below is about HL_7RQB_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.6

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

6

Unit IDs

5HAU|1|1A|G|2048
5HAU|1|1A|U|2049
5HAU|1|1A|G|2050
5HAU|1|1A|A|2051
5HAU|1|1A|A|2052
5HAU|1|1A|G|2053
5HAU|1|1A|A|2054
5HAU|1|1A|U|2055
5HAU|1|1A|G|2056
5HAU|1|1A|C|2057

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 13

50S ribosomal protein L32

Chain 1E

50S ribosomal protein L3