HL_5HAU_051

3D structure

PDB id

5HAU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGGAUG

Length

6 nucleotides

Bulged bases

5HAU|1|1A|G|2226, 5HAU|1|1A|G|2227, 5HAU|1|1A|U|2229

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5HAU_051 not in the Motif Atlas

Homologous match to HL_7RQB_052

Geometric discrepancy: 0.3689

The information below is about HL_7RQB_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_98426.1

Basepair signature

cWW-F

Number of instances in this motif group

6

Unit IDs

5HAU|1|1A|C|2225
5HAU|1|1A|G|2226
5HAU|1|1A|G|2227
5HAU|1|1A|A|2228
5HAU|1|1A|U|2229
5HAU|1|1A|G|2230

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1D

50S ribosomal protein L2

Chain 1Z

50S ribosomal protein L28