HL_5HAU_135

3D structure

PDB id

5HAU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UUAGAAGCA

Length

9 nucleotides

Bulged bases

5HAU|1|2A|A|1115

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5HAU_135 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.3366

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

5HAU|1|2A|U|1110
5HAU|1|2A|U|1111
5HAU|1|2A|A|1112
5HAU|1|2A|G|1113
5HAU|1|2A|A|1114
5HAU|1|2A|A|1115
5HAU|1|2A|G|1116
5HAU|1|2A|C|1117
5HAU|1|2A|A|1118

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2K

50S ribosomal protein L11

Chain 2z

Chimera protein of 50S ribosomal protein L9 and Elongation factor G