3D structure

PDB id
5HAU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
GCAAAUC
Length
7 nucleotides
Bulged bases
5HAU|1|2A|C|1538, 5HAU|1|2A|U|1542
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5HAU_144 not in the Motif Atlas
Homologous match to HL_7RQB_038
Geometric discrepancy: 0.088
The information below is about HL_7RQB_038
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_46680.1
Basepair signature
cWW-F-F-F
Number of instances in this motif group
27

Unit IDs

5HAU|1|2A|G|1537
5HAU|1|2A|C|1538
5HAU|1|2A|A|1539
5HAU|1|2A|A|1540
5HAU|1|2A|A|1541
5HAU|1|2A|U|1542
5HAU|1|2A|C|1543

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 2D
50S ribosomal protein L2

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 1.6307 s