HL_5HAU_161

3D structure

PDB id

5HAU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

5HAU|1|2A|A|2279, 5HAU|1|2A|C|2286

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5HAU_161 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.0609

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

5HAU|1|2A|C|2275
5HAU|1|2A|U|2276
5HAU|1|2A|A|2277
5HAU|1|2A|A|2278
5HAU|1|2A|A|2279
5HAU|1|2A|A|2280
5HAU|1|2A|G|2281
5HAU|1|2A|G|2282
5HAU|1|2A|U|2283
5HAU|1|2A|A|2284
5HAU|1|2A|A|2285
5HAU|1|2A|C|2286
5HAU|1|2A|G|2287

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2O

50S ribosomal protein L16

Chain 2Y

50S ribosomal protein L27