HL_5HAU_164

3D structure

PDB id

5HAU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCUGCAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5HAU_164 not in the Motif Atlas

Homologous match to HL_7RQB_057

Geometric discrepancy: 0.0795

The information below is about HL_7RQB_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53619.1

Basepair signature

cWW-F-F

Number of instances in this motif group

11

Unit IDs

5HAU|1|2A|C|2366
5HAU|1|2A|C|2367
5HAU|1|2A|U|2368
5HAU|1|2A|G|2369
5HAU|1|2A|C|2370
5HAU|1|2A|A|2371
5HAU|1|2A|A|2372
5HAU|1|2A|G|2373

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 26

50S ribosomal protein L35

Chain 2N

50S ribosomal protein L15

Chain 2Y

50S ribosomal protein L27