HL_5HCP_031

3D structure

PDB id

5HCP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Metalnikowin bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.89 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5HCP_031 not in the Motif Atlas

Homologous match to HL_7RQB_033

Geometric discrepancy: 0.0645

The information below is about HL_7RQB_033

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_41998.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

69

Unit IDs

5HCP|1|1A|G|1326
5HCP|1|1A|U|1327
5HCP|1|1A|G|1328
5HCP|1|1A|A|1329
5HCP|1|1A|G|1330
5HCP|1|1A|A|1331
5HCP|1|1A|A|1332
5HCP|1|1A|U|1333
5HCP|1|1A|C|1334

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1R

50S ribosomal protein L17

Chain 1W

50S ribosomal protein L22