HL_5HCP_047

3D structure

PDB id

5HCP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Metalnikowin bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.89 Å

Loop

Sequence

GUAACUAUAAC

Length

11 nucleotides

Bulged bases

5HCP|1|1A|A|1934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5HCP_047 not in the Motif Atlas

Geometric match to HL_5TBW_049

Geometric discrepancy: 0.1481

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

5HCP|1|1A|G|1931
5HCP|1|1A|U|1932
5HCP|1|1A|A|1933
5HCP|1|1A|A|1934
5HCP|1|1A|C|1935
5HCP|1|1A|U|1936
5HCP|1|1A|A|1937
5HCP|1|1A|U|1938
5HCP|1|1A|A|1939
5HCP|1|1A|A|1940
5HCP|1|1A|C|1941

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1a

Small subunit ribosomal RNA; SSU rRNA

Chain 1x

Transfer RNA; tRNA