HL_5HCP_117

3D structure

PDB id

5HCP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Metalnikowin bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.89 Å

Loop

Sequence

GGUUCGUGGAGCC

Length

13 nucleotides

Bulged bases

5HCP|1|2A|G|412

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5HCP_117 not in the Motif Atlas

Homologous match to HL_4WF9_013

Geometric discrepancy: 0.3162

The information below is about HL_4WF9_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69139.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5HCP|1|2A|G|407
5HCP|1|2A|G|408
5HCP|1|2A|U|409
5HCP|1|2A|U|410
5HCP|1|2A|C|411
5HCP|1|2A|G|412
5HCP|1|2A|U|413
5HCP|1|2A|G|414
5HCP|1|2A|G|415
5HCP|1|2A|A|416
5HCP|1|2A|G|417
5HCP|1|2A|C|418
5HCP|1|2A|C|419

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L28

Chain 2P

50S ribosomal protein L15