HL_5HCP_218

3D structure

PDB id

5HCP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Metalnikowin bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.89 Å

Loop

Sequence

GCGAAAGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5HCP_218 not in the Motif Atlas

Geometric match to HL_2IL9_007

Geometric discrepancy: 0.2412

The information below is about HL_2IL9_007

Detailed Annotation

GNRA with extra near cWW

Broad Annotation

GNRA with extra near cWW

Motif group

HL_82182.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

21

Unit IDs

5HCP|1|2a|G|1147
5HCP|1|2a|C|1148
5HCP|1|2a|G|1149
5HCP|1|2a|A|1150
5HCP|1|2a|A|1151
5HCP|1|2a|A|1152
5HCP|1|2a|G|1153
5HCP|1|2a|C|1154

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains