HL_5HCQ_039

3D structure

PDB id

5HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CAAGAG

Length

6 nucleotides

Bulged bases

5HCQ|1|1A|A|1680

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5HCQ_039 not in the Motif Atlas

Homologous match to HL_7RQB_041

Geometric discrepancy: 0.0562

The information below is about HL_7RQB_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01057.2

Basepair signature

cWW

Number of instances in this motif group

5

Unit IDs

5HCQ|1|1A|C|1676
5HCQ|1|1A|A|1677
5HCQ|1|1A|A|1678
5HCQ|1|1A|G|1679
5HCQ|1|1A|A|1680
5HCQ|1|1A|G|1681

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains