HL_5HCQ_052

3D structure

PDB id

5HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

5HCQ|1|1A|A|2279, 5HCQ|1|1A|C|2286

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5HCQ_052 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.0346

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

5HCQ|1|1A|C|2275
5HCQ|1|1A|U|2276
5HCQ|1|1A|A|2277
5HCQ|1|1A|A|2278
5HCQ|1|1A|A|2279
5HCQ|1|1A|A|2280
5HCQ|1|1A|G|2281
5HCQ|1|1A|G|2282
5HCQ|1|1A|U|2283
5HCQ|1|1A|A|2284
5HCQ|1|1A|A|2285
5HCQ|1|1A|C|2286
5HCQ|1|1A|G|2287

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 10

50S ribosomal protein L27

Chain 1Q

50S ribosomal protein L16