3D structure

PDB id
5HCQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
2.8 Å

Loop

Sequence
GCUCAAC
Length
7 nucleotides
Bulged bases
5HCQ|1|1a|U|603
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5HCQ_082 not in the Motif Atlas
Homologous match to HL_6CZR_085
Geometric discrepancy: 0.1167
The information below is about HL_6CZR_085
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_20554.2
Basepair signature
cWW-tWH-F-F-F
Number of instances in this motif group
5

Unit IDs

5HCQ|1|1a|G|601
5HCQ|1|1a|C|602
5HCQ|1|1a|U|603
5HCQ|1|1a|C|604
5HCQ|1|1a|A|605
5HCQ|1|1a|A|606
5HCQ|1|1a|C|607

Current chains

Chain 1a
16S Ribosomal RNA

Nearby chains

Chain 1d
30S ribosomal protein S4
Chain 1p
30S ribosomal protein S16

Coloring options:


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