HL_5HCQ_135

3D structure

PDB id

5HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5HCQ_135 not in the Motif Atlas

Homologous match to HL_7RQB_033

Geometric discrepancy: 0.0474

The information below is about HL_7RQB_033

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_41998.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

69

Unit IDs

5HCQ|1|2A|G|1326
5HCQ|1|2A|U|1327
5HCQ|1|2A|G|1328
5HCQ|1|2A|A|1329
5HCQ|1|2A|G|1330
5HCQ|1|2A|A|1331
5HCQ|1|2A|A|1332
5HCQ|1|2A|U|1333
5HCQ|1|2A|C|1334

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2R

50S ribosomal protein L17

Chain 2W

50S ribosomal protein L22