HL_5HCQ_170

3D structure

PDB id

5HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGCAGCC

Length

7 nucleotides

Bulged bases

5HCQ|1|2A|A|2811

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5HCQ_170 not in the Motif Atlas

Geometric match to HL_7LYF_001

Geometric discrepancy: 0.3922

The information below is about HL_7LYF_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

5HCQ|1|2A|G|2804
5HCQ|1|2A|G|2805
5HCQ|1|2A|C|2806
5HCQ|1|2A|A|2811
5HCQ|1|2A|G|2812
5HCQ|1|2A|C|2813
5HCQ|1|2A|C|2814

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains