HL_5HCQ_217

3D structure

PDB id

5HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GACGGAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5HCQ_217 not in the Motif Atlas

Homologous match to HL_9DFE_198

Geometric discrepancy: 0.0877

The information below is about HL_9DFE_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50860.2

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

5HCQ|1|1A|G|2315
5HCQ|1|1A|A|2316
5HCQ|1|1A|C|2317
5HCQ|1|1A|G|2318
5HCQ|1|1A|G|2319
5HCQ|1|1A|A|2320
5HCQ|1|1A|A|2321
5HCQ|1|1A|A|2322
5HCQ|1|1A|U|2323

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1G

50S ribosomal protein L5