HL_5HCR_006

3D structure

PDB id

5HCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Oncocin 10wt bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

5HCR|1|1A|A|184

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5HCR_006 not in the Motif Atlas

Homologous match to HL_7RQB_006

Geometric discrepancy: 0.0448

The information below is about HL_7RQB_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06192.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

14

Unit IDs

5HCR|1|1A|G|182
5HCR|1|1A|A|183
5HCR|1|1A|A|184
5HCR|1|1A|A|185
5HCR|1|1A|C|186
5HCR|1|1A|A|187
5HCR|1|1A|U|188
5HCR|1|1A|C|189

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L28

Chain 1P

50S ribosomal protein L15