5HCR Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_5HCR_001 | 1/1A/57:66 | No text annotation | homologous HL_7RQB_001 NA | |
| HL_5HCR_002 | 1/1A/85:93 | No text annotation | homologous HL_7RQB_002 NA | |
| HL_5HCR_003 | 1/1A/120:125 | No text annotation | homologous HL_7RQB_003 NA | |
| HL_5HCR_004 | 1/1A/135:140 | No text annotation | homologous HL_7RQB_004 NA | |
| HL_5HCR_006 | 1/1A/182:189 | No text annotation | homologous HL_7RQB_006 NA | |
| HL_5HCR_007 | 1/1A/213:218 | No text annotation | homologous HL_7RQB_007 NA | |
| HL_5HCR_008 | 1/1A/234:240 | No text annotation | homologous HL_7RQB_008 NA | |
| HL_5HCR_009 | 1/1A/268:274 | No text annotation | geometric HL_5J7L_018 NA | |
| HL_5HCR_010 | 1/1A/328:335 | No text annotation | homologous HL_7RQB_010 NA | |
| HL_5HCR_011 | 1/1A/342:346 | No text annotation | homologous HL_7RQB_011 NA | |
| HL_5HCR_012 | 1/1A/350:358 | T-loop with unstacked turn | homologous HL_7RQB_012 NA | |
| HL_5HCR_013 | 1/1A/408:418 | No text annotation | homologous HL_7RQB_013 NA | |
| HL_5HCR_014 | 1/1A/436:443 | No text annotation | homologous HL_7RQB_014 NA | |
| HL_5HCR_015 | 1/1A/487:492 | GNRA | homologous HL_7RQB_015 NA | |
| HL_5HCR_016 | 1/1A/512:517 | GNRA | homologous HL_7RQB_016 NA | |
| HL_5HCR_018 | 1/1A/588:597 | No text annotation | homologous HL_7RQB_018 NA | |
| HL_5HCR_019 | 1/1A/634:640 | No text annotation | homologous HL_7RQB_019 NA | |
| HL_5HCR_020 | 1/1A/653:658 | GNRA | homologous HL_7RQB_020 NA | |
| HL_5HCR_021 | 1/1A/665:671 | GNRA | homologous HL_4WF9_021 HL_34789.1 | |
| HL_5HCR_022 | 1/1A/758:765 | No text annotation | homologous HL_7RQB_022 NA | |
| HL_5HCR_023 | 1/1A/790:799 | No text annotation | homologous HL_7RQB_023 NA | |
| HL_5HCR_024 | 1/1A/825:831 | No text annotation | homologous HL_7RQB_024 NA | |
| HL_5HCR_025 | 1/1A/872:877 | No text annotation | homologous HL_7RQB_025 NA | |
| HL_5HCR_026 | 1/1A/930:937 | No text annotation | homologous HL_7RQB_026 NA | |
| HL_5HCR_027 | 1/1A/999:1006 | GNRA | homologous HL_7RQB_027 NA | |
| HL_5HCR_028 | 1/1A/1023:1030 | No text annotation | homologous HL_7RQB_028 NA | |
| HL_5HCR_029 | 1/1A/1216:1222 | No text annotation | homologous HL_7RQB_031 NA | |
| HL_5HCR_030 | 1/1A/1267:1272 | GNRA | homologous HL_7RQB_032 NA | |
| HL_5HCR_031 | 1/1A/1326:1334 | No text annotation | homologous HL_7RQB_033 NA | |
| HL_5HCR_032 | 1/1A/1369:1375 | No text annotation | homologous HL_7RQB_034 NA | |
| HL_5HCR_033 | 1/1A/1408:1413 | GNRA | homologous HL_5J7L_167 NA | |
| HL_5HCR_034 | 1/1A/1434:1443 | No text annotation | homologous HL_7RQB_036 NA | |
| HL_5HCR_035 | 1/1A/1498:1505 | No text annotation | homologous HL_7RQB_037 NA | |
| HL_5HCR_036 | 1/1A/1537:1543 | No text annotation | homologous HL_7RQB_038 NA | |
| HL_5HCR_037 | 1/1A/1611:1614 | No text annotation | homologous HL_7RQB_039 NA | |
| HL_5HCR_038 | 1/1A/1657:1664 | No text annotation | homologous HL_7RQB_040 NA | |
| HL_5HCR_039 | 1/1A/1676:1681 | No text annotation | homologous HL_7RQB_041 NA | |
| HL_5HCR_040 | 1/1A/1737:1742 | No text annotation | geometric HL_7RQB_042 NA | |
| HL_5HCR_041 | 1/1A/1764:1770 | No text annotation | homologous HL_7RQB_043 NA | |
| HL_5HCR_042 | 1/1A/1782:1786 | No text annotation | homologous HL_7RQB_044 NA | |
| HL_5HCR_043 | 1/1A/1807:1817 | No text annotation | homologous HL_7RQB_045 NA | |
| HL_5HCR_044 | 1/1A/1836:1841 | GNRA | homologous HL_7RQB_046 NA | |
| HL_5HCR_045 | 1/1A/1894:1899 | GNRA | homologous HL_7RQB_047 NA | |
| HL_5HCR_046 | 1/1A/1931:1941 | No text annotation | geometric HL_5TBW_049 NA | |
| HL_5HCR_047 | 1/1A/1970:1978 | No text annotation | homologous HL_7RQB_049 NA | |
| HL_5HCR_048 | 1/1A/2048:2057 | No text annotation | homologous HL_7RQB_050 NA | |
| HL_5HCR_050 | 1/1A/2225:2230 | No text annotation | homologous HL_7RQB_052 NA | |
| HL_5HCR_051 | 1/1A/2259:2267 | No text annotation | homologous HL_7RQB_053 NA | |
| HL_5HCR_052 | 1/1A/2275:2287 | No text annotation | homologous HL_7RQB_054 NA | |
| HL_5HCR_217 | 1/1A/2315:2323 | No text annotation | homologous HL_9DFE_198 HL_02452.1 | |
| HL_5HCR_054 | 1/1A/2335:2342 | Pseudoknot geometry | homologous HL_7RQB_056 NA | |
| HL_5HCR_055 | 1/1A/2366:2373 | No text annotation | homologous HL_7RQB_057 NA | |
| HL_5HCR_056 | 1/1A/2385:2390 | GNRA | homologous HL_7RQB_058 NA | |
| HL_5HCR_057 | 1/1A/2415:2424 | No text annotation | homologous HL_7RQB_059 NA | |
| HL_5HCR_058 | 1/1A/2482:2490 | No text annotation | homologous HL_7RQB_060 NA | |
| HL_5HCR_059 | 1/1A/2539:2546 | No text annotation | homologous HL_7RQB_061 NA | |
| HL_5HCR_060 | 1/1A/2562:2568 | No text annotation | homologous HL_4WF9_058 HL_48677.1 | |
| HL_5HCR_061 | 1/1A/2605:2610 | GNRA | homologous HL_7RQB_063 NA | |
| HL_5HCR_062 | 1/1A/2669:2674 | GNRA | geometric HL_7RQB_064 NA | |
| HL_5HCR_063 | 1/1A/2712:2717 | No text annotation | homologous HL_7RQB_065 NA | |
| HL_5HCR_064 | 1/1A/2757:2771 | No text annotation | homologous HL_7RQB_066 NA | |
| HL_5HCR_066 | 1/1A/2828:2836 | No text annotation | homologous HL_7RQB_068 NA | |
| HL_5HCR_067 | 1/1A/2865:2870 | GNRA | homologous HL_7RQB_069 NA | |
| HL_5HCR_210 | 1/1B/34:48 | No text annotation | homologous HL_9DFE_067 HL_97756.3 | |
| HL_5HCR_068 | 1/1B/38:44 | No text annotation | homologous HL_7RQB_070 NA | |
| HL_5HCR_069 | 1/1B/86:91 | GNRA | homologous HL_7RQB_071 NA | |
| HL_5HCR_070 | 1/1a/13:23 | No text annotation | homologous HL_4LFB_001 HL_31940.1 | |
| HL_5HCR_071 | 1/1a/143:169 | No text annotation | ||
| HL_5HCR_072 | 1/1a/187:192 | No text annotation | homologous HL_6CZR_075 NA | |
| HL_5HCR_074 | 1/1a/255:263 | GNRA related | homologous HL_4LFB_006 HL_36455.1 | |
| HL_5HCR_075 | 1/1a/292:297 | GNRA | homologous HL_4LFB_007 HL_34789.1 | |
| HL_5HCR_076 | 1/1a/316:329 | No text annotation | homologous HL_4LFB_008 HL_39665.1 | |
| HL_5HCR_078 | 1/1a/375:380 | GNRA | homologous HL_4LFB_010 HL_34789.1 | |
| HL_5HCR_079 | 1/1a/415:420 | UNCG | homologous HL_4LFB_011 HL_61337.1 | |
| HL_5HCR_080 | 1/1a/453:459 | GNRA | homologous HL_6CZR_083 NA | |
| HL_5HCR_081 | 1/1a/506:511 | No text annotation | geometric HL_4WF9_003 HL_75660.6 | |
| HL_5HCR_082 | 1/1a/601:607 | GNRA-like with tWH | homologous HL_4LFB_014 HL_92337.1 | |
| HL_5HCR_083 | 1/1a/673:682 | No text annotation | homologous HL_4LFB_015 HL_38491.1 | |
| HL_5HCR_084 | 1/1a/710:715 | GNRA | homologous HL_4LFB_016 HL_34789.1 | |
| HL_5HCR_085 | 1/1a/770:780 | No text annotation | homologous HL_4LFB_017 HL_38491.1 | |
| HL_5HCR_086 | 1/1a/822:826 | Mini UNCG | homologous HL_6CZR_089 NA | |
| HL_5HCR_087 | 1/1a/840:845 | GNRA | homologous HL_4LFB_019 HL_34789.1 | |
| HL_5HCR_088 | 1/1a/875:880 | GNRA | homologous HL_5J7L_020 NA | |
| HL_5HCR_089 | 1/1a/941:950 | No text annotation | homologous HL_4LFB_021 HL_97521.1 | |
| HL_5HCR_090 | 1/1a/991:996 | GNRA | homologous HL_4LFB_022 HL_34789.1 | |
| HL_5HCR_091 | 1/1a/1059:1064 | GNRA | homologous HL_4LFB_024 HL_34789.1 | |
| HL_5HCR_092 | 1/1a/1072:1079 | T-loop related | homologous HL_4LFB_025 HL_63894.1 | |
| HL_5HCR_093 | 1/1a/1117:1123 | No text annotation | homologous HL_6CZR_097 NA | |
| HL_5HCR_094 | 1/1a/1148:1153 | GNRA | homologous HL_4LFB_027 HL_34789.1 | |
| HL_5HCR_095 | 1/1a/1247:1252 | GNRA | homologous HL_4LFB_028 HL_34789.1 | |
| HL_5HCR_096 | 1/1a/1296:1305 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_93658.1 | |
| HL_5HCR_097 | 1/1a/1338:1349 | No text annotation | homologous HL_4LFB_030 HL_86432.1 | |
| HL_5HCR_098 | 1/1a/1430:1435 | No text annotation | homologous HL_6CZR_102 NA | |
| HL_5HCR_099 | 1/1a/1493:1498 | GNRA | homologous HL_6CZR_103 NA | |
| HL_5HCR_100 | 1/1x/13:22 | tRNA D-loop | homologous HL_1QF6_001 NA | |
| HL_5HCR_101 | 1/1x/31:39 | tRNA anticodon loop | homologous HL_6CFJ_107 HL_81376.1 | |
| HL_5HCR_102 | 1/1x/53:61 | T-loop with 2 stacked bulged bases | homologous HL_6CFJ_108 HL_33597.1 | |
| HL_5HCR_103 | 1/2A/57:66 | No text annotation | homologous HL_7RQB_001 NA | |
| HL_5HCR_104 | 1/2A/85:93 | No text annotation | homologous HL_7RQB_002 NA | |
| HL_5HCR_105 | 1/2A/120:125 | No text annotation | homologous HL_7RQB_003 NA | |
| HL_5HCR_106 | 1/2A/135:140 | No text annotation | homologous HL_7RQB_004 NA | |
| HL_5HCR_108 | 1/2A/182:189 | No text annotation | geometric HL_5J7L_139 NA | |
| HL_5HCR_109 | 1/2A/213:218 | No text annotation | homologous HL_7RQB_007 NA | |
| HL_5HCR_110 | 1/2A/234:240 | No text annotation | homologous HL_7RQB_008 NA | |
| HL_5HCR_213 | 1/2A/268:274 | No text annotation | homologous HL_9DFE_008 NA | |
| HL_5HCR_111 | 1/2A/269:272 | No text annotation | homologous HL_7RQB_009 NA | |
| HL_5HCR_112 | 1/2A/328:335 | No text annotation | homologous HL_7RQB_010 NA | |
| HL_5HCR_113 | 1/2A/342:346 | No text annotation | homologous HL_7RQB_011 NA | |
| HL_5HCR_114 | 1/2A/350:358 | T-loop with unstacked turn | homologous HL_7RQB_012 NA | |
| HL_5HCR_214 | 1/2A/409:417 | No text annotation | ||
| HL_5HCR_116 | 1/2A/436:443 | No text annotation | homologous HL_7RQB_014 NA | |
| HL_5HCR_117 | 1/2A/487:492 | GNRA | homologous HL_7RQB_015 NA | |
| HL_5HCR_118 | 1/2A/512:517 | GNRA | homologous HL_4WF9_016 HL_34789.1 | |
| HL_5HCR_120 | 1/2A/588:597 | No text annotation | homologous HL_7RQB_018 NA | |
| HL_5HCR_121 | 1/2A/634:640 | No text annotation | homologous HL_7RQB_019 NA | |
| HL_5HCR_122 | 1/2A/653:658 | GNRA | homologous HL_7RQB_020 NA | |
| HL_5HCR_123 | 1/2A/665:671 | No text annotation | homologous HL_7RQB_021 NA | |
| HL_5HCR_125 | 1/2A/758:765 | No text annotation | homologous HL_7RQB_022 NA | |
| HL_5HCR_126 | 1/2A/790:799 | No text annotation | homologous HL_7RQB_023 NA | |
| HL_5HCR_127 | 1/2A/825:831 | No text annotation | homologous HL_7RQB_024 NA | |
| HL_5HCR_128 | 1/2A/872:877 | No text annotation | homologous HL_4WF9_025 HL_27530.1 | |
| HL_5HCR_129 | 1/2A/930:937 | No text annotation | homologous HL_7RQB_026 NA | |
| HL_5HCR_130 | 1/2A/999:1006 | GNRA | homologous HL_7RQB_027 NA | |
| HL_5HCR_131 | 1/2A/1023:1030 | No text annotation | homologous HL_7RQB_028 NA | |
| HL_5HCR_132 | 1/2A/1109:1119 | No text annotation | homologous HL_6PRV_001 HL_20174.1 | |
| HL_5HCR_133 | 1/2A/1137:1144 | GNRA wlth tandem sheared | homologous HL_6PRV_002 HL_98423.1 | |
| HL_5HCR_135 | 1/2A/1267:1272 | GNRA | homologous HL_7RQB_032 NA | |
| HL_5HCR_136 | 1/2A/1326:1334 | No text annotation | homologous HL_7RQB_033 NA | |
| HL_5HCR_137 | 1/2A/1369:1375 | No text annotation | homologous HL_7RQB_034 NA | |
| HL_5HCR_138 | 1/2A/1408:1413 | GNRA | homologous HL_7RQB_035 NA | |
| HL_5HCR_139 | 1/2A/1434:1443 | No text annotation | homologous HL_7RQB_036 NA | |
| HL_5HCR_140 | 1/2A/1498:1505 | No text annotation | homologous HL_7RQB_037 NA | |
| HL_5HCR_141 | 1/2A/1537:1543 | No text annotation | homologous HL_7RQB_038 NA | |
| HL_5HCR_143 | 1/2A/1611:1614 | No text annotation | homologous HL_7RQB_039 NA | |
| HL_5HCR_144 | 1/2A/1657:1664 | No text annotation | homologous HL_7RQB_040 NA | |
| HL_5HCR_145 | 1/2A/1676:1681 | No text annotation | homologous HL_7RQB_041 NA | |
| HL_5HCR_146 | 1/2A/1737:1742 | No text annotation | geometric HL_7RQB_042 NA | |
| HL_5HCR_147 | 1/2A/1764:1770 | No text annotation | homologous HL_7RQB_043 NA | |
| HL_5HCR_148 | 1/2A/1782:1786 | No text annotation | homologous HL_7RQB_044 NA | |
| HL_5HCR_149 | 1/2A/1807:1817 | No text annotation | homologous HL_7RQB_045 NA | |
| HL_5HCR_150 | 1/2A/1836:1841 | GNRA | homologous HL_7RQB_046 NA | |
| HL_5HCR_151 | 1/2A/1894:1899 | GNRA | homologous HL_7RQB_047 NA | |
| HL_5HCR_152 | 1/2A/1931:1941 | No text annotation | geometric HL_5TBW_049 NA | |
| HL_5HCR_153 | 1/2A/1970:1978 | No text annotation | homologous HL_7RQB_049 NA | |
| HL_5HCR_154 | 1/2A/2048:2057 | No text annotation | homologous HL_7RQB_050 NA | |
| HL_5HCR_156 | 1/2A/2225:2230 | No text annotation | homologous HL_7RQB_052 NA | |
| HL_5HCR_157 | 1/2A/2259:2267 | No text annotation | homologous HL_4WF9_049 HL_11974.1 | |
| HL_5HCR_158 | 1/2A/2275:2287 | No text annotation | homologous HL_7RQB_054 NA | |
| HL_5HCR_159 | 1/2A/2313:2325 | No text annotation | geometric HL_4V9F_003 HL_75660.6 | |
| HL_5HCR_160 | 1/2A/2335:2342 | Pseudoknot geometry | homologous HL_7RQB_056 NA | |
| HL_5HCR_161 | 1/2A/2366:2373 | No text annotation | homologous HL_7RQB_057 NA | |
| HL_5HCR_162 | 1/2A/2385:2390 | GNRA | homologous HL_7RQB_058 NA | |
| HL_5HCR_163 | 1/2A/2415:2424 | No text annotation | homologous HL_7RQB_059 NA | |
| HL_5HCR_164 | 1/2A/2482:2490 | No text annotation | homologous HL_7RQB_060 NA | |
| HL_5HCR_165 | 1/2A/2539:2546 | No text annotation | homologous HL_7RQB_061 NA | |
| HL_5HCR_166 | 1/2A/2562:2568 | No text annotation | homologous HL_4WF9_058 HL_48677.1 | |
| HL_5HCR_167 | 1/2A/2605:2610 | GNRA | homologous HL_7RQB_063 NA | |
| HL_5HCR_168 | 1/2A/2669:2674 | GNRA | homologous HL_5J7L_197 NA | |
| HL_5HCR_169 | 1/2A/2712:2717 | No text annotation | homologous HL_7RQB_065 NA | |
| HL_5HCR_170 | 1/2A/2757:2771 | No text annotation | homologous HL_7RQB_066 NA | |
| HL_5HCR_172 | 1/2A/2828:2836 | No text annotation | homologous HL_7RQB_068 NA | |
| HL_5HCR_173 | 1/2A/2865:2870 | GNRA | homologous HL_7RQB_069 NA | |
| HL_5HCR_174 | 1/2B/38:44 | No text annotation | geometric HL_1MJI_002 HL_59381.1 | |
| HL_5HCR_175 | 1/2B/86:91 | GNRA | homologous HL_5TBW_186 NA | |
| HL_5HCR_176 | 1/2a/13:23 | No text annotation | homologous HL_4LFB_001 HL_31940.1 | |
| HL_5HCR_178 | 1/2a/153:158 | GNRA | homologous HL_4LFB_003 HL_34789.1 | |
| HL_5HCR_179 | 1/2a/187:192 | No text annotation | homologous HL_4LFB_004 HL_89167.1 | |
| HL_5HCR_180 | 1/2a/207:213 | No text annotation | homologous HL_6CZR_076 NA | |
| HL_5HCR_181 | 1/2a/255:263 | GNRA related | homologous HL_4LFB_006 HL_36455.1 | |
| HL_5HCR_182 | 1/2a/292:297 | GNRA | homologous HL_4LFB_007 HL_34789.1 | |
| HL_5HCR_183 | 1/2a/316:329 | No text annotation | homologous HL_4LFB_008 HL_39665.1 | |
| HL_5HCR_184 | 1/2a/338:343 | UNCG | homologous HL_4LFB_009 HL_61337.1 | |
| HL_5HCR_185 | 1/2a/375:380 | GNRA | homologous HL_4LFB_010 HL_34789.1 | |
| HL_5HCR_218 | 1/2a/414:421 | No text annotation | geometric HL_8P9A_133 HL_79004.1 | |
| HL_5HCR_186 | 1/2a/415:420 | No text annotation | ||
| HL_5HCR_187 | 1/2a/453:459 | GNRA | homologous HL_4LFB_012 HL_34789.1 | |
| HL_5HCR_188 | 1/2a/506:511 | No text annotation | geometric HL_4WF9_003 HL_75660.6 | |
| HL_5HCR_189 | 1/2a/601:607 | GNRA-like with tWH | homologous HL_4LFB_014 HL_92337.1 | |
| HL_5HCR_190 | 1/2a/673:682 | No text annotation | homologous HL_4LFB_015 HL_38491.1 | |
| HL_5HCR_191 | 1/2a/710:715 | GNRA | homologous HL_4LFB_016 HL_34789.1 | |
| HL_5HCR_192 | 1/2a/770:780 | No text annotation | homologous HL_4LFB_017 HL_38491.1 | |
| HL_5HCR_193 | 1/2a/822:826 | Mini UNCG | homologous HL_6CZR_089 NA | |
| HL_5HCR_194 | 1/2a/840:845 | GNRA | homologous HL_4LFB_019 HL_34789.1 | |
| HL_5HCR_195 | 1/2a/875:880 | GNRA | homologous HL_5J7L_020 NA | |
| HL_5HCR_196 | 1/2a/941:950 | No text annotation | homologous HL_4LFB_021 HL_97521.1 | |
| HL_5HCR_197 | 1/2a/991:996 | GNRA | homologous HL_4LFB_022 HL_34789.1 | |
| HL_5HCR_198 | 1/2a/1059:1064 | GNRA | homologous HL_4LFB_024 HL_34789.1 | |
| HL_5HCR_199 | 1/2a/1072:1079 | T-loop related | homologous HL_4LFB_025 HL_63894.1 | |
| HL_5HCR_200 | 1/2a/1117:1123 | No text annotation | geometric HL_4V88_198 NA | |
| HL_5HCR_201 | 1/2a/1148:1153 | GNRA | homologous HL_6CZR_098 NA | |
| HL_5HCR_202 | 1/2a/1247:1252 | No text annotation | homologous HL_6CZR_099 NA | |
| HL_5HCR_203 | 1/2a/1296:1305 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_93658.1 | |
| HL_5HCR_204 | 1/2a/1338:1349 | No text annotation | homologous HL_4LFB_030 HL_86432.1 | |
| HL_5HCR_205 | 1/2a/1430:1435 | No text annotation | homologous HL_6CZR_102 NA | |
| HL_5HCR_206 | 1/2a/1493:1498 | GNRA | homologous HL_4LFB_032 HL_34789.1 | |
| HL_5HCR_207 | 1/2x/13:22 | tRNA D-loop | homologous HL_5B63_003 HL_65478.1 | |
| HL_5HCR_208 | 1/2x/31:39 | tRNA anticodon loop | homologous HL_6CFJ_107 HL_81376.1 | |
| HL_5HCR_209 | 1/2x/53:61 | T-loop with 2 stacked bulged bases | homologous HL_6CFJ_108 HL_33597.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_5HCR_005 | No text annotation | ||
| HL_5HCR_017 | No text annotation | ||
| HL_5HCR_049 | No text annotation | ||
| HL_5HCR_053 | No text annotation | ||
| HL_5HCR_065 | No text annotation | ||
| HL_5HCR_211 | No text annotation | ||
| HL_5HCR_073 | Mini UNCG | ||
| HL_5HCR_077 | No text annotation | ||
| HL_5HCR_212 | No text annotation | ||
| HL_5HCR_107 | No text annotation | ||
| HL_5HCR_115 | No text annotation | ||
| HL_5HCR_119 | No text annotation | ||
| HL_5HCR_124 | No text annotation | ||
| HL_5HCR_215 | No text annotation | ||
| HL_5HCR_134 | No text annotation | ||
| HL_5HCR_142 | tRNA D-loop | ||
| HL_5HCR_155 | No text annotation | ||
| HL_5HCR_171 | No text annotation | ||
| HL_5HCR_177 | No text annotation | ||
| HL_5HCR_216 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_5HCR_001 | 1/1A/23:29, 1/1A/534:540 | Triple sheared with non-canonical cWW | homologous IL_7RQB_001 NA | |
| IL_5HCR_002 | 1/1A/35:36, 1/1A/467:469 | Single bulged A | homologous IL_7RQB_002 NA | |
| IL_5HCR_366 | 1/1A/41:42, 1/1A/460:462 | Minor groove platform | homologous IL_9DFE_348 IL_34520.1 | |
| IL_5HCR_004 | 1/1A/79:83, 1/1A/95:102 | Kink-turn | homologous IL_7RQB_004 NA | |
| IL_5HCR_005 | 1/1A/171:172, 1/1A/200:202 | Single stack bend | homologous IL_7RQB_005 NA | |
| IL_5HCR_006 | 1/1A/176:182, 1/1A/189:196 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_7RQB_006 NA | |
| IL_5HCR_007 | 1/1A/227:233, 1/1A/241:246 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_7RQB_007 NA | |
| IL_5HCR_008 | 1/1A/290:291, 1/1A/391:393 | Major groove platform | homologous IL_7RQB_009 NA | |
| IL_5HCR_010 | 1/1A/303:307, 1/1A/380:383 | tSH-tHW | homologous IL_7RQB_011 NA | |
| IL_5HCR_011 | 1/1A/311:313, 1/1A/373:376 | Isolated tHS basepair with bulges | homologous IL_7RQB_012 NA | |
| IL_5HCR_012 | 1/1A/316:318, 1/1A/366:370 | No text annotation | homologous IL_7RQB_013 NA | |
| IL_5HCR_013 | 1/1A/506:509, 1/1A/520:533 | No text annotation | homologous IL_7RQB_014 NA | |
| IL_5HCR_014 | 1/1A/586:588, 1/1A/597:599 | No text annotation | geometric IL_7RQB_015 NA | |
| IL_5HCR_015 | 1/1A/628:632, 1/1A/642:646 | AAA cross-strand stack | homologous IL_7RQB_016 NA | |
| IL_5HCR_016 | 1/1A/718:720, 1/1A/852:854 | No text annotation | homologous IL_7RQB_017 NA | |
| IL_5HCR_017 | 1/1A/720:724, 1/1A/845:852 | tHW-tHW cross-strand stack | geometric IL_7RQB_018 NA | |
| IL_5HCR_018 | 1/1A/743:744, 1/1A/809:811 | Single bulged A | geometric IL_7RQB_019 NA | |
| IL_5HCR_019 | 1/1A/748:749, 1/1A/774:776 | Single bulged G | geometric IL_7RQB_020 NA | |
| IL_5HCR_020 | 1/1A/749:753, 1/1A/770:774 | Triple sheared | homologous IL_7RQB_021 NA | |
| IL_5HCR_021 | 1/1A/784:787, 1/1A/802:804 | Major groove platform with extra cWW | homologous IL_7RQB_022 NA | |
| IL_5HCR_022 | 1/1A/821:823, 1/1A/833:837 | Multiple bulged bases | homologous IL_7RQB_023 NA | |
| IL_5HCR_023 | 1/1A/883:884, 1/1A/984:986 | Single stack bend | homologous IL_7RQB_024 NA | |
| IL_5HCR_024 | 1/1A/890:892, 1/1A/975:978 | Intercalated cWW | homologous IL_7RQB_025 NA | |
| IL_5HCR_350 | 1/1A/890:896, 1/1A/972:978 | No text annotation | homologous IL_9DFE_024 IL_68243.1 | |
| IL_5HCR_025 | 1/1A/892:896, 1/1A/972:975 | No text annotation | geometric IL_7RQB_026 NA | |
| IL_5HCR_351 | 1/1A/904:908, 1/1A/960:964 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_9DFE_026 IL_38862.5 | |
| IL_5HCR_027 | 1/1A/908:909, 1/1A/958:960 | Minor groove platform | homologous IL_7RQB_028 NA | |
| IL_5HCR_028 | 1/1A/910:914, 1/1A/954:957 | C-loop | homologous IL_7RQB_029 NA | |
| IL_5HCR_030 | 1/1A/921:923, 1/1A/944:947 | Minor groove platform with extra cWW | homologous IL_7RQB_031 NA | |
| IL_5HCR_031 | 1/1A/923:925, 1/1A/943:944 | Minor groove platform | geometric IL_7RQB_032 NA | |
| IL_5HCR_032 | 1/1A/926:927, 1/1A/940:942 | Single bulged A | homologous IL_7RQB_033 NA | |
| IL_5HCR_033 | 1/1A/996:998, 1/1A/1007:1009 | No text annotation | homologous IL_7RQB_034 NA | |
| IL_5HCR_034 | 1/1A/1039:1041, 1/1A/1204:1205 | Single bulged C | homologous IL_7RQB_035 NA | |
| IL_5HCR_035 | 1/1A/1043:1047, 1/1A/1198:1202 | UAA/GAN | homologous IL_7RQB_036 NA | |
| IL_5HCR_036 | 1/1A/1049:1056, 1/1A/1195:1196 | SSU/LSU pseudoknot | homologous IL_7RQB_037 NA | |
| IL_5HCR_037 | 1/1A/1056:1058, 1/1A/1194:1195 | Single bulged U | geometric IL_7RQB_038 NA | |
| IL_5HCR_038 | 1/1A/1063:1069, 1/1A/1184:1189 | Kink-turn related | homologous IL_4WF9_039 IL_57188.6 | |
| IL_5HCR_039 | 1/1A/1069:1075, 1/1A/1169:1184 | No text annotation | geometric IL_7RQB_040 NA | |
| IL_5HCR_040 | 1/1A/1076:1079, 1/1A/1166:1168 | Isolated non-canonical cWW pair | homologous IL_5J7L_282 NA | |
| IL_5HCR_041 | 1/1A/1088:1097, 1/1A/1152:1157 | No text annotation | ||
| IL_5HCR_043 | 1/1A/1240:1242, 1/1A/1292:1295 | Isolated cWS basepair | homologous IL_7RQB_045 NA | |
| IL_5HCR_044 | 1/1A/1246:1250, 1/1A/1285:1288 | No text annotation | homologous IL_7RQB_046 NA | |
| IL_5HCR_045 | 1/1A/1252:1259, 1/1A/1279:1283 | Kink-turn | homologous IL_7RQB_047 NA | |
| IL_5HCR_046 | 1/1A/1263:1265, 1/1A/1274:1275 | Single bulged A | homologous IL_7RQB_048 NA | |
| IL_5HCR_047 | 1/1A/1307:1314, 1/1A/2032:2038 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_049 NA | |
| IL_5HCR_048 | 1/1A/1355:1358, 1/1A/1648:1649 | Major groove platform; stack outside cWW | homologous IL_7RQB_050 NA | |
| IL_5HCR_049 | 1/1A/1364:1368, 1/1A/1376:1378 | C-loop | homologous IL_7RQB_051 NA | |
| IL_5HCR_050 | 1/1A/1396:1400, 1/1A/1421:1425 | UAA/GAN | homologous IL_7RQB_052 NA | |
| IL_5HCR_051 | 1/1A/1402:1406, 1/1A/1415:1419 | tSH-tHW-tHS | homologous IL_7RQB_053 NA | |
| IL_5HCR_052 | 1/1A/1460:1461, 1/1A/1628:1632 | No text annotation | homologous IL_7RQB_054 NA | |
| IL_5HCR_053 | 1/1A/1462:1466, 1/1A/1623:1627 | UAA/GAN | homologous IL_7RQB_055 NA | |
| IL_5HCR_054 | 1/1A/1478:1480, 1/1A/1603:1606 | Isolated tWW turn | homologous IL_7RQB_056 NA | |
| IL_5HCR_055 | 1/1A/1482:1485, 1/1A/1597:1601 | tSH-tHW | homologous IL_7RQB_057 NA | |
| IL_5HCR_056 | 1/1A/1494:1496, 1/1A/1508:1509 | Single stack bend | homologous IL_7RQB_058 NA | |
| IL_5HCR_057 | 1/1A/1497:1498, 1/1A/1505:1507 | Single bulged A | geometric IL_7RQB_059 NA | |
| IL_5HCR_058 | 1/1A/1515:1519, 1/1A/1565:1568 | UAA/GAN variation | homologous IL_7RQB_060 NA | |
| IL_5HCR_059 | 1/1A/1527:1528, 1/1A/1551:1557 | No text annotation | homologous IL_7RQB_061 NA | |
| IL_5HCR_060 | 1/1A/1534:1536, 1/1A/1544:1545 | Single bulged A | homologous IL_7RQB_062 NA | |
| IL_5HCR_061 | 1/1A/1571:1575, 1/1A/1586:1592 | No text annotation | homologous IL_7RQB_063 NA | |
| IL_5HCR_062 | 1/1A/1697:1702, 1/1A/2025:2027 | No text annotation | homologous IL_7RQB_064 NA | |
| IL_5HCR_063 | 1/1A/1709:1711, 1/1A/2016:2018 | Isolated tWW turn | homologous IL_7A0S_060 IL_10432.1 | |
| IL_5HCR_064 | 1/1A/1712:1715, 1/1A/2014:2015 | Major groove platform; stack outside cWW | geometric IL_7RQB_066 NA | |
| IL_5HCR_352 | 1/1A/1712:1720, 1/1A/2011:2015 | No text annotation | homologous IL_9DFE_066 IL_80252.1 | |
| IL_5HCR_065 | 1/1A/1715:1720, 1/1A/2011:2014 | Intercalated tWH | homologous IL_7RQB_067 NA | |
| IL_5HCR_066 | 1/1A/1732:1737, 1/1A/1742:1748 | tSH-tSH-tHH-tHS | homologous IL_7RQB_068 NA | |
| IL_5HCR_067 | 1/1A/1800:1801, 1/1A/2001:2003 | Single bulged A | homologous IL_7RQB_069 NA | |
| IL_5HCR_068 | 1/1A/1828:1834, 1/1A/1843:1851 | Kink-turn related | homologous IL_7RQB_070 NA | |
| IL_5HCR_069 | 1/1A/1867:1870, 1/1A/1923:1924 | Minor groove platform, major groove intercalation | homologous IL_7RQB_071 NA | |
| IL_5HCR_070 | 1/1A/1871:1872, 1/1A/1919:1922 | Major groove intercalation | homologous IL_7RQB_072 NA | |
| IL_5HCR_071 | 1/1A/1876:1879, 1/1A/1914:1915 | Minor groove platform | homologous IL_7RQB_073 NA | |
| IL_5HCR_072 | 1/1A/1881:1885, 1/1A/1908:1912 | UAA/GAN with extra stack | homologous IL_7RQB_074 NA | |
| IL_5HCR_073 | 1/1A/1886:1890, 1/1A/1903:1907 | Triple sheared | homologous IL_7RQB_075 NA | |
| IL_5HCR_074 | 1/1A/1954:1955, 1/1A/1985:1988 | Bulged stacked bases | homologous IL_7RQB_076 NA | |
| IL_5HCR_075 | 1/1A/1955:1966, 1/1A/1982:1985 | No text annotation | geometric IL_4WF9_077 IL_84014.1 | |
| IL_5HCR_076 | 1/1A/2071:2073, 1/1A/2628:2629 | Major groove platform | homologous IL_7RQB_078 NA | |
| IL_5HCR_077 | 1/1A/2075:2078, 1/1A/2622:2626 | No text annotation | homologous IL_9DFE_079 IL_70335.1 | |
| IL_5HCR_078 | 1/1A/2088:2090, 1/1A/2453:2454 | Single bulged U | homologous IL_7RQB_080 NA | |
| IL_5HCR_079 | 1/1A/2091:2092, 1/1A/2449:2452 | Minor groove platform | homologous IL_5J7L_324 NA | |
| IL_5HCR_080 | 1/1A/2102:2104, 1/1A/2247:2250 | Isolated tHS basepair with bulges | homologous IL_7RQB_082 NA | |
| IL_5HCR_081 | 1/1A/2106:2108, 1/1A/2243:2245 | No text annotation | homologous IL_7RQB_083 NA | |
| IL_5HCR_082 | 1/1A/2308:2310, 1/1A/2328:2332 | Isolated tHS basepair with bulges | geometric IL_7RQB_088 NA | |
| IL_5HCR_083 | 1/1A/2361:2364, 1/1A/2375:2378 | Double sheared | homologous IL_7RQB_089 NA | |
| IL_5HCR_084 | 1/1A/2412:2414, 1/1A/2425:2426 | Major groove platform | homologous IL_7RQB_090 NA | |
| IL_5HCR_085 | 1/1A/2464:2465, 1/1A/2509:2511 | Single stack bend | geometric IL_7RQB_091 NA | |
| IL_5HCR_086 | 1/1A/2465:2466, 1/1A/2507:2509 | Major groove platform | homologous IL_7RQB_092 NA | |
| IL_5HCR_087 | 1/1A/2468:2470, 1/1A/2504:2505 | Major groove platform | homologous IL_4WF9_091 IL_48076.7 | |
| IL_5HCR_088 | 1/1A/2470:2472, 1/1A/2500:2504 | Major groove minor groove platform with extra cWW | geometric IL_7RQB_094 NA | |
| IL_5HCR_089 | 1/1A/2477:2481, 1/1A/2491:2495 | Triple sheared | homologous IL_7RQB_095 NA | |
| IL_5HCR_090 | 1/1A/2518:2519, 1/1A/2591:2593 | Major groove platform | homologous IL_4WF9_094 IL_46637.1 | |
| IL_5HCR_091 | 1/1A/2521:2523, 1/1A/2585:2589 | Isolated non-canonical cWW with bulges | homologous IL_7RQB_097 NA | |
| IL_5HCR_092 | 1/1A/2523:2524, 1/1A/2582:2585 | Multiple bulged bases | geometric IL_7RQB_098 NA | |
| IL_5HCR_093 | 1/1A/2533:2534, 1/1A/2551:2554 | Major groove platform with intercalation | homologous IL_7RQB_099 NA | |
| IL_5HCR_095 | 1/1A/2602:2603, 1/1A/2612:2614 | Single bulged A | homologous IL_7RQB_101 NA | |
| IL_5HCR_096 | 1/1A/2647:2651, 1/1A/2786:2794 | tSH-tHS-tHW | homologous IL_7RQB_102 NA | |
| IL_5HCR_097 | 1/1A/2663:2669, 1/1A/2674:2679 | Sarcin-Ricin target in LSU H95; G-bulge | homologous IL_7RQB_103 NA | |
| IL_5HCR_098 | 1/1A/2691:2695, 1/1A/2737:2739 | C-loop | homologous IL_7RQB_104 NA | |
| IL_5HCR_099 | 1/1A/2698:2702, 1/1A/2730:2734 | No text annotation | homologous IL_7RQB_105 NA | |
| IL_5HCR_100 | 1/1A/2706:2707, 1/1A/2722:2726 | No text annotation | homologous IL_8VTW_105 NA | |
| IL_5HCR_101 | 1/1A/2749:2754, 1/1A/2774:2779 | UAA/GAN with extra cWW | homologous IL_7RQB_107 NA | |
| IL_5HCR_102 | 1/1A/2847:2848, 1/1A/2887:2889 | Single bulged C | homologous IL_7RQB_108 NA | |
| IL_5HCR_103 | 1/1A/2852:2855, 1/1A/2879:2883 | No text annotation | homologous IL_7RQB_109 NA | |
| IL_5HCR_104 | 1/1A/2856:2861, 1/1A/2874:2878 | tHS double platform | homologous IL_7RQB_110 NA | |
| IL_5HCR_105 | 1/1B/17:18, 1/1B/65:67 | Major groove intercalation | homologous IL_7RQB_111 NA | |
| IL_5HCR_107 | 1/1B/23:28, 1/1B/56:60 | No text annotation | homologous IL_7RQB_112 NA | |
| IL_5HCR_367 | 1/1B/30:31, 1/1B/51:54 | No text annotation | homologous IL_9DFE_112 IL_73108.1 | |
| IL_5HCR_109 | 1/1B/34:38, 1/1B/44:48 | Symmetric double minor groove platform | geometric IL_7RQB_114 NA | |
| IL_5HCR_110 | 1/1B/71:79, 1/1B/98:106 | Bacterial 5S Loop E | homologous IL_7RQB_115 NA | |
| IL_5HCR_111 | 1/1a/31:33, 1/1a/536:537 | Single bulged G | homologous IL_4LFB_001 IL_28408.1 | |
| IL_5HCR_112 | 1/1a/45:46, 1/1a/392:394 | Single bulged A | homologous IL_4LFB_002 IL_14190.1 | |
| IL_5HCR_113 | 1/1a/48:53, 1/1a/355:357 | No text annotation | homologous IL_4LFB_003 IL_68149.1 | |
| IL_5HCR_114 | 1/1a/55:57, 1/1a/352:353 | Minor groove platform | homologous IL_6CZR_116 NA | |
| IL_5HCR_115 | 1/1a/64:67, 1/1a/97:98 | Multiple bulged bases | homologous IL_4LFB_005 IL_71421.1 | |
| IL_5HCR_116 | 1/1a/68:70, 1/1a/94:96 | Isolated non-canonical cWW pair | homologous IL_4LFB_006 IL_01003.1 | |
| IL_5HCR_118 | 1/1a/123:126, 1/1a/227:228 | Multiple bulged bases | homologous IL_4LFB_007 IL_75289.1 | |
| IL_5HCR_119 | 1/1a/127:131, 1/1a/223:226 | No text annotation | homologous IL_4LFB_008 IL_60988.1 | |
| IL_5HCR_121 | 1/1a/181:184, 1/1a/195:198 | Tandem non-canonical cWW pairs | geometric IL_4K27_001 NA | |
| IL_5HCR_122 | 1/1a/238:243, 1/1a/273:280 | Kink-turn with non-sequential stacking | homologous IL_4LFB_011 IL_46174.4 | |
| IL_5HCR_123 | 1/1a/245:248, 1/1a/270:271 | No text annotation | homologous IL_5J7L_015 NA | |
| IL_5HCR_124 | 1/1a/288:289, 1/1a/300:304 | C-loop | homologous IL_4LFB_013 IL_06671.1 | |
| IL_5HCR_125 | 1/1a/363:365, 1/1a/388:389 | Single bulged U | homologous IL_5J7L_017 NA | |
| IL_5HCR_126 | 1/1a/367:371, 1/1a/385:386 | C-loop | homologous IL_5J7L_018 NA | |
| IL_5HCR_127 | 1/1a/371:372, 1/1a/383:385 | Single bulged G | geometric IL_4LFB_016 IL_28408.1 | |
| IL_5HCR_128 | 1/1a/405:412, 1/1a/423:429 | No text annotation | homologous IL_4LFB_017 IL_62329.1 | |
| IL_5HCR_129 | 1/1a/441:445, 1/1a/468:473 | 6x5 Sarcin-Ricin; G-bulge | geometric IL_4LFB_018 IL_82100.1 | |
| IL_5HCR_368 | 1/1a/445:450, 1/1a/462:468 | No text annotation | homologous IL_4LFB_019 IL_31561.1 | |
| IL_5HCR_131 | 1/1a/488:495, 1/1a/524:525 | SSU/LSU pseudoknot | homologous IL_4LFB_020 IL_11411.1 | |
| IL_5HCR_132 | 1/1a/499:505, 1/1a/512:520 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_5HCR_133 | 1/1a/553:559, 1/1a/858:859 | No text annotation | homologous IL_4LFB_022 IL_20847.1 | |
| IL_5HCR_134 | 1/1a/564:568, 1/1a/741:745 | tSH-tHW-tHS | homologous IL_6CZR_135 NA | |
| IL_5HCR_136 | 1/1a/578:580, 1/1a/628:629 | Major groove platform | homologous IL_4LFB_024 IL_48076.7 | |
| IL_5HCR_137 | 1/1a/581:582, 1/1a/624:627 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_029 NA | |
| IL_5HCR_138 | 1/1a/589:596, 1/1a/612:617 | No text annotation | homologous IL_4LFB_026 IL_04211.1 | |
| IL_5HCR_139 | 1/1a/638:639, 1/1a/735:738 | Major groove platform; stack outside cWW | homologous IL_4LFB_027 IL_74641.1 | |
| IL_5HCR_140 | 1/1a/641:642, 1/1a/731:733 | Major groove platform | homologous IL_4LFB_028 IL_48076.7 | |
| IL_5HCR_141 | 1/1a/646:650, 1/1a/724:727 | Tandem non-canonical cWW pairs | homologous IL_4LFB_029 IL_15225.1 | |
| IL_5HCR_354 | 1/1a/657:661, 1/1a/697:701 | Triple non-canonical cWW pairs | homologous IL_4LFB_065 IL_71154.1 | |
| IL_5HCR_143 | 1/1a/667:672, 1/1a/683:691 | Kink-turn | homologous IL_4LFB_031 IL_95727.1 | |
| IL_5HCR_144 | 1/1a/758:762, 1/1a/788:789 | Left turn | homologous IL_4LFB_032 IL_29346.3 | |
| IL_5HCR_145 | 1/1a/763:767, 1/1a/783:787 | tSH-tHW-tHS | homologous IL_4LFB_033 IL_05821.1 | |
| IL_5HCR_146 | 1/1a/865:872, 1/1a/883:888 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4LFB_034 IL_84044.1 | |
| IL_5HCR_147 | 1/1a/900:901, 1/1a/1376:1378 | Single bulged A | homologous IL_5J7L_039 NA | |
| IL_5HCR_148 | 1/1a/903:905, 1/1a/1373:1374 | Single bulged G | homologous IL_4LFB_036 IL_28408.1 | |
| IL_5HCR_355 | 1/1a/911:913, 1/1a/1363:1367 | Minor groove platform | homologous IL_4LFB_037 IL_61370.1 | |
| IL_5HCR_150 | 1/1a/931:932, 1/1a/1208:1210 | Minor groove platform | homologous IL_4LFB_038 IL_34520.1 | |
| IL_5HCR_151 | 1/1a/971:975, 1/1a/1027:1028 | Minor groove platform | geometric IL_6CZR_151 NA | |
| IL_5HCR_154 | 1/1a/1031:1033, 1/1a/1190:1191 | Single bulged U | homologous IL_4LFB_042 IL_97561.1 | |
| IL_5HCR_155 | 1/1a/1035:1039, 1/1a/1186:1188 | Isolated cWS basepair | homologous IL_4LFB_044 IL_82453.1 | |
| IL_5HCR_156 | 1/1a/1040:1041, 1/1a/1181:1185 | Minor groove platform | homologous IL_5J7L_048 NA | |
| IL_5HCR_157 | 1/1a/1043:1044, 1/1a/1177:1179 | Single bulged U | geometric IL_4LFB_046 IL_97561.1 | |
| IL_5HCR_158 | 1/1a/1044:1046, 1/1a/1175:1177 | Isolated non-canonical cWW pair | geometric IL_4LFB_047 IL_68118.1 | |
| IL_5HCR_159 | 1/1a/1107:1110, 1/1a/1128:1132 | Minor groove platform | homologous IL_6CZR_158 NA | |
| IL_5HCR_160 | 1/1a/1112:1115, 1/1a/1125:1126 | Minor groove platform | homologous IL_4LFB_049 IL_87975.1 | |
| IL_5HCR_161 | 1/1a/1229:1235, 1/1a/1266:1272 | No text annotation | homologous IL_4LFB_051 IL_12056.1 | |
| IL_5HCR_162 | 1/1a/1237:1240, 1/1a/1259:1264 | 180 degree turn | homologous IL_6CZR_161 NA | |
| IL_5HCR_163 | 1/1a/1241:1242, 1/1a/1256:1258 | Not an internal loop | geometric IL_4LFB_053 NA | |
| IL_5HCR_164 | 1/1a/1242:1244, 1/1a/1255:1256 | Minor groove platform | homologous IL_4LFB_054 IL_34520.1 | |
| IL_5HCR_165 | 1/1a/1285:1290, 1/1a/1311:1316 | No text annotation | homologous IL_4LFB_055 IL_57885.1 | |
| IL_5HCR_166 | 1/1a/1382:1384, 1/1a/1479:1482 | No text annotation | homologous IL_4LFB_056 IL_18228.1 | |
| IL_5HCR_167 | 1/1a/1384:1387, 1/1a/1475:1479 | No text annotation | geometric IL_4V88_464 NA | |
| IL_5HCR_168 | 1/1a/1388:1390, 1/1a/1472:1474 | Isolated non-canonical cWW pair | geometric IL_5VCI_002 IL_01003.1 | |
| IL_5HCR_170 | 1/1a/1395:1397, 1/1a/1464:1466 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 NA | |
| IL_5HCR_171 | 1/1a/1399:1402, 1/1a/1459:1462 | Double sheared | homologous IL_5J7L_062 NA | |
| IL_5HCR_172 | 1/1a/1414:1418, 1/1a/1444:1447 | UAA/GAN variation | homologous IL_4LFB_062 IL_77691.6 | |
| IL_5HCR_173 | 1/1a/1418:1420, 1/1a/1442:1444 | Isolated non-canonical cWW pair | geometric IL_4LFB_063 IL_01003.1 | |
| IL_5HCR_174 | 1/1a/1423:1428, 1/1a/1437:1439 | Isolated basepair with bulged bases | homologous IL_6CZR_172 NA | |
| IL_5HCR_175 | 1/2A/23:29, 1/2A/534:540 | Triple sheared with non-canonical cWW | homologous IL_7RQB_001 NA | |
| IL_5HCR_176 | 1/2A/35:36, 1/2A/467:469 | Single bulged A | homologous IL_7RQB_002 NA | |
| IL_5HCR_369 | 1/2A/41:42, 1/2A/460:462 | Minor groove platform | homologous IL_9DFE_348 IL_34520.1 | |
| IL_5HCR_178 | 1/2A/79:83, 1/2A/95:102 | Kink-turn | homologous IL_7RQB_004 NA | |
| IL_5HCR_179 | 1/2A/171:172, 1/2A/200:202 | Single stack bend | homologous IL_7RQB_005 NA | |
| IL_5HCR_180 | 1/2A/176:182, 1/2A/189:196 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_006 NA | |
| IL_5HCR_181 | 1/2A/227:233, 1/2A/241:246 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_7RQB_007 NA | |
| IL_5HCR_182 | 1/2A/268:269, 1/2A/272:274 | Single bulged U | geometric IL_7RQB_008 NA | |
| IL_5HCR_183 | 1/2A/290:291, 1/2A/391:393 | Major groove platform | homologous IL_7RQB_009 NA | |
| IL_5HCR_356 | 1/2A/296:301, 1/2A/385:386 | No text annotation | ||
| IL_5HCR_185 | 1/2A/303:307, 1/2A/380:383 | tSH-tHW | homologous IL_7RQB_011 NA | |
| IL_5HCR_186 | 1/2A/311:313, 1/2A/373:376 | Isolated tHS basepair with bulges | homologous IL_7RQB_012 NA | |
| IL_5HCR_187 | 1/2A/316:318, 1/2A/366:370 | No text annotation | homologous IL_7RQB_013 NA | |
| IL_5HCR_188 | 1/2A/506:509, 1/2A/520:533 | No text annotation | homologous IL_7RQB_014 NA | |
| IL_5HCR_189 | 1/2A/586:588, 1/2A/597:599 | No text annotation | geometric IL_7RQB_015 NA | |
| IL_5HCR_191 | 1/2A/628:632, 1/2A/642:646 | AAA cross-strand stack | homologous IL_7RQB_016 NA | |
| IL_5HCR_192 | 1/2A/718:720, 1/2A/852:854 | No text annotation | homologous IL_7RQB_017 NA | |
| IL_5HCR_193 | 1/2A/720:724, 1/2A/845:852 | tHW-tHW cross-strand stack | geometric IL_7RQB_018 NA | |
| IL_5HCR_194 | 1/2A/743:744, 1/2A/809:811 | Single bulged A | homologous IL_7RQB_019 NA | |
| IL_5HCR_195 | 1/2A/748:749, 1/2A/774:776 | Single bulged G | homologous IL_7RQB_020 NA | |
| IL_5HCR_196 | 1/2A/749:753, 1/2A/770:774 | Triple sheared | geometric IL_7RQB_021 NA | |
| IL_5HCR_197 | 1/2A/784:787, 1/2A/802:804 | Major groove platform with extra cWW | homologous IL_7RQB_022 NA | |
| IL_5HCR_198 | 1/2A/821:823, 1/2A/833:837 | Multiple bulged bases | homologous IL_7RQB_023 NA | |
| IL_5HCR_199 | 1/2A/883:884, 1/2A/984:986 | Single stack bend | homologous IL_7RQB_024 NA | |
| IL_5HCR_200 | 1/2A/890:892, 1/2A/975:978 | Intercalated cWW | geometric IL_7RQB_025 NA | |
| IL_5HCR_357 | 1/2A/890:896, 1/2A/972:978 | No text annotation | homologous IL_9DFE_024 IL_68243.1 | |
| IL_5HCR_201 | 1/2A/892:896, 1/2A/972:975 | No text annotation | homologous IL_7RQB_026 NA | |
| IL_5HCR_202 | 1/2A/904:908, 1/2A/960:964 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_7RQB_027 NA | |
| IL_5HCR_203 | 1/2A/908:909, 1/2A/958:960 | Minor groove platform | homologous IL_7RQB_028 NA | |
| IL_5HCR_204 | 1/2A/910:914, 1/2A/954:957 | C-loop | homologous IL_7RQB_029 NA | |
| IL_5HCR_206 | 1/2A/921:926, 1/2A/942:947 | No text annotation | geometric IL_8P9A_410 IL_57885.1 | |
| IL_5HCR_358 | 1/2A/921:927, 1/2A/940:947 | No text annotation | ||
| IL_5HCR_207 | 1/2A/926:927, 1/2A/940:942 | Single bulged A | homologous IL_7RQB_033 NA | |
| IL_5HCR_208 | 1/2A/996:998, 1/2A/1007:1009 | No text annotation | homologous IL_7RQB_034 NA | |
| IL_5HCR_209 | 1/2A/1039:1041, 1/2A/1204:1205 | Single bulged C | homologous IL_7A0S_032 IL_05642.1 | |
| IL_5HCR_210 | 1/2A/1043:1047, 1/2A/1198:1202 | UAA/GAN | homologous IL_7RQB_036 NA | |
| IL_5HCR_211 | 1/2A/1049:1056, 1/2A/1195:1196 | SSU/LSU pseudoknot | geometric IL_5J7L_278 NA | |
| IL_5HCR_212 | 1/2A/1056:1058, 1/2A/1194:1195 | Single bulged U | homologous IL_7RQB_038 NA | |
| IL_5HCR_213 | 1/2A/1063:1069, 1/2A/1184:1189 | Kink-turn related | homologous IL_4WF9_039 IL_57188.6 | |
| IL_5HCR_214 | 1/2A/1069:1075, 1/2A/1169:1184 | No text annotation | geometric IL_7RQB_040 NA | |
| IL_5HCR_215 | 1/2A/1076:1079, 1/2A/1166:1168 | Isolated non-canonical cWW pair | homologous IL_7RQB_041 NA | |
| IL_5HCR_217 | 1/2A/1088:1096, 1/2A/1153:1157 | Kink-turn | geometric IL_4V9F_042 IL_99692.3 | |
| IL_5HCR_218 | 1/2A/1104:1108, 1/2A/1121:1124 | No text annotation | homologous IL_9DFE_042 NA | |
| IL_5HCR_219 | 1/2A/1108:1109, 1/2A/1119:1121 | Single stack bend | geometric IL_4LFB_041 IL_15011.1 | |
| IL_5HCR_220 | 1/2A/1240:1242, 1/2A/1292:1295 | Isolated cWS basepair | homologous IL_7RQB_045 NA | |
| IL_5HCR_221 | 1/2A/1246:1250, 1/2A/1285:1288 | No text annotation | homologous IL_7RQB_046 NA | |
| IL_5HCR_222 | 1/2A/1252:1259, 1/2A/1279:1283 | Kink-turn | homologous IL_7RQB_047 NA | |
| IL_5HCR_223 | 1/2A/1263:1265, 1/2A/1274:1275 | Single bulged A | homologous IL_7RQB_048 NA | |
| IL_5HCR_224 | 1/2A/1307:1314, 1/2A/2032:2038 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_049 NA | |
| IL_5HCR_225 | 1/2A/1355:1358, 1/2A/1648:1649 | Major groove platform; stack outside cWW | homologous IL_7RQB_050 NA | |
| IL_5HCR_226 | 1/2A/1364:1368, 1/2A/1376:1378 | C-loop | homologous IL_7RQB_051 NA | |
| IL_5HCR_227 | 1/2A/1396:1400, 1/2A/1421:1425 | UAA/GAN | homologous IL_7RQB_052 NA | |
| IL_5HCR_228 | 1/2A/1402:1406, 1/2A/1415:1419 | tSH-tHW-tHS | homologous IL_7RQB_053 NA | |
| IL_5HCR_230 | 1/2A/1460:1461, 1/2A/1628:1632 | No text annotation | homologous IL_7RQB_054 NA | |
| IL_5HCR_231 | 1/2A/1462:1466, 1/2A/1623:1627 | UAA/GAN | homologous IL_7RQB_055 NA | |
| IL_5HCR_232 | 1/2A/1478:1480, 1/2A/1603:1606 | Isolated tWW turn | homologous IL_7RQB_056 NA | |
| IL_5HCR_233 | 1/2A/1482:1485, 1/2A/1597:1601 | tSH-tHW | homologous IL_7RQB_057 NA | |
| IL_5HCR_234 | 1/2A/1494:1496, 1/2A/1508:1509 | Single stack bend | homologous IL_7RQB_058 NA | |
| IL_5HCR_235 | 1/2A/1497:1498, 1/2A/1505:1507 | Single bulged A | geometric IL_7RQB_059 NA | |
| IL_5HCR_236 | 1/2A/1515:1519, 1/2A/1565:1568 | UAA/GAN variation | homologous IL_7RQB_060 NA | |
| IL_5HCR_237 | 1/2A/1527:1528, 1/2A/1551:1557 | No text annotation | homologous IL_7RQB_061 NA | |
| IL_5HCR_238 | 1/2A/1534:1536, 1/2A/1544:1545 | Single bulged A | homologous IL_7RQB_062 NA | |
| IL_5HCR_239 | 1/2A/1571:1575, 1/2A/1586:1592 | No text annotation | homologous IL_7RQB_063 NA | |
| IL_5HCR_240 | 1/2A/1697:1702, 1/2A/2025:2027 | No text annotation | homologous IL_7RQB_064 NA | |
| IL_5HCR_241 | 1/2A/1709:1711, 1/2A/2016:2018 | Isolated tWW turn | homologous IL_7RQB_065 NA | |
| IL_5HCR_242 | 1/2A/1712:1715, 1/2A/2014:2015 | Major groove platform; stack outside cWW | geometric IL_7RQB_066 NA | |
| IL_5HCR_359 | 1/2A/1712:1720, 1/2A/2011:2015 | No text annotation | homologous IL_9DFE_066 IL_80252.1 | |
| IL_5HCR_243 | 1/2A/1715:1720, 1/2A/2011:2014 | Intercalated tWH | homologous IL_7RQB_067 NA | |
| IL_5HCR_244 | 1/2A/1732:1737, 1/2A/1742:1748 | tSH-tSH-tHH-tHS | homologous IL_7RQB_068 NA | |
| IL_5HCR_245 | 1/2A/1800:1801, 1/2A/2001:2003 | Single bulged A | homologous IL_7RQB_069 NA | |
| IL_5HCR_246 | 1/2A/1828:1834, 1/2A/1843:1851 | Kink-turn related | homologous IL_7RQB_070 NA | |
| IL_5HCR_247 | 1/2A/1867:1870, 1/2A/1923:1924 | Minor groove platform, major groove intercalation | homologous IL_7RQB_071 NA | |
| IL_5HCR_248 | 1/2A/1871:1872, 1/2A/1919:1922 | Major groove intercalation | homologous IL_7RQB_072 NA | |
| IL_5HCR_249 | 1/2A/1876:1879, 1/2A/1914:1915 | Minor groove platform | homologous IL_7RQB_073 NA | |
| IL_5HCR_250 | 1/2A/1881:1885, 1/2A/1908:1912 | UAA/GAN with extra stack | homologous IL_7RQB_074 NA | |
| IL_5HCR_251 | 1/2A/1886:1890, 1/2A/1903:1907 | Triple sheared | homologous IL_7RQB_075 NA | |
| IL_5HCR_252 | 1/2A/1954:1955, 1/2A/1985:1988 | Bulged stacked bases | homologous IL_7RQB_076 NA | |
| IL_5HCR_253 | 1/2A/1955:1966, 1/2A/1982:1985 | No text annotation | geometric IL_4WF9_077 IL_84014.1 | |
| IL_5HCR_254 | 1/2A/2071:2073, 1/2A/2628:2629 | Major groove platform | homologous IL_7RQB_078 NA | |
| IL_5HCR_255 | 1/2A/2075:2078, 1/2A/2622:2626 | No text annotation | homologous IL_7RQB_079 NA | |
| IL_5HCR_256 | 1/2A/2088:2090, 1/2A/2453:2454 | Single bulged U | homologous IL_7RQB_080 NA | |
| IL_5HCR_257 | 1/2A/2091:2092, 1/2A/2449:2452 | Minor groove platform | homologous IL_5J7L_324 NA | |
| IL_5HCR_258 | 1/2A/2102:2104, 1/2A/2247:2250 | Isolated tHS basepair with bulges | homologous IL_7RQB_082 NA | |
| IL_5HCR_259 | 1/2A/2106:2108, 1/2A/2243:2245 | No text annotation | homologous IL_7RQB_083 NA | |
| IL_5HCR_370 | 1/2A/2121:2125, 1/2A/2206:2210 | No text annotation | ||
| IL_5HCR_361 | 1/2A/2308:2310, 1/2A/2328:2332 | No text annotation | homologous IL_9DFE_088 IL_14250.1 | |
| IL_5HCR_262 | 1/2A/2361:2364, 1/2A/2375:2378 | Double sheared | homologous IL_7RQB_089 NA | |
| IL_5HCR_263 | 1/2A/2412:2414, 1/2A/2425:2426 | Major groove platform | homologous IL_7RQB_090 NA | |
| IL_5HCR_264 | 1/2A/2464:2465, 1/2A/2509:2511 | Single stack bend | geometric IL_7A0S_083 IL_15011.1 | |
| IL_5HCR_265 | 1/2A/2465:2466, 1/2A/2507:2509 | Major groove platform | homologous IL_7RQB_092 NA | |
| IL_5HCR_266 | 1/2A/2468:2470, 1/2A/2504:2505 | Major groove platform | geometric IL_4WF9_091 IL_48076.7 | |
| IL_5HCR_267 | 1/2A/2470:2472, 1/2A/2500:2504 | Major groove minor groove platform with extra cWW | homologous IL_7RQB_094 NA | |
| IL_5HCR_268 | 1/2A/2477:2481, 1/2A/2491:2495 | Triple sheared | homologous IL_7RQB_095 NA | |
| IL_5HCR_269 | 1/2A/2518:2519, 1/2A/2591:2593 | Major groove platform | homologous IL_7RQB_096 NA | |
| IL_5HCR_270 | 1/2A/2521:2523, 1/2A/2585:2589 | Isolated non-canonical cWW with bulges | homologous IL_7RQB_097 NA | |
| IL_5HCR_271 | 1/2A/2523:2524, 1/2A/2582:2585 | Multiple bulged bases | geometric IL_7RQB_098 NA | |
| IL_5HCR_272 | 1/2A/2533:2534, 1/2A/2551:2554 | Major groove platform with intercalation | homologous IL_7RQB_099 NA | |
| IL_5HCR_274 | 1/2A/2602:2603, 1/2A/2612:2614 | Single bulged A | homologous IL_7RQB_101 NA | |
| IL_5HCR_275 | 1/2A/2647:2651, 1/2A/2786:2794 | tSH-tHS-tHW | homologous IL_7RQB_102 NA | |
| IL_5HCR_276 | 1/2A/2663:2669, 1/2A/2674:2679 | Sarcin-Ricin target in LSU H95; G-bulge | geometric IL_7RQB_103 NA | |
| IL_5HCR_277 | 1/2A/2691:2695, 1/2A/2737:2739 | C-loop | homologous IL_7RQB_104 NA | |
| IL_5HCR_278 | 1/2A/2698:2702, 1/2A/2730:2734 | No text annotation | homologous IL_7RQB_105 NA | |
| IL_5HCR_279 | 1/2A/2706:2707, 1/2A/2722:2726 | Multiple bulged bases | homologous IL_7RQB_106 NA | |
| IL_5HCR_280 | 1/2A/2749:2754, 1/2A/2774:2779 | UAA/GAN with extra cWW | homologous IL_5J7L_350 NA | |
| IL_5HCR_281 | 1/2A/2847:2848, 1/2A/2887:2889 | Single bulged C | homologous IL_7RQB_108 NA | |
| IL_5HCR_282 | 1/2A/2852:2855, 1/2A/2879:2883 | No text annotation | homologous IL_7RQB_109 NA | |
| IL_5HCR_283 | 1/2A/2856:2861, 1/2A/2874:2878 | tHS double platform | homologous IL_7RQB_110 NA | |
| IL_5HCR_284 | 1/2B/17:18, 1/2B/65:67 | Major groove intercalation | homologous IL_7RQB_111 NA | |
| IL_5HCR_285 | 1/2B/23:28, 1/2B/56:60 | No text annotation | homologous IL_7RQB_112 NA | |
| IL_5HCR_287 | 1/2B/30:31, 1/2B/51:54 | Major groove minor groove platform; mini C-loop | homologous IL_4V9F_103 IL_73108.1 | |
| IL_5HCR_288 | 1/2B/34:38, 1/2B/44:48 | Symmetric double minor groove platform | homologous IL_7RQB_114 NA | |
| IL_5HCR_289 | 1/2B/71:79, 1/2B/98:106 | Bacterial 5S Loop E | homologous IL_7RQB_115 NA | |
| IL_5HCR_290 | 1/2a/31:33, 1/2a/536:537 | Single bulged G | homologous IL_4LFB_001 IL_28408.1 | |
| IL_5HCR_291 | 1/2a/45:46, 1/2a/392:394 | Single bulged A | homologous IL_4LFB_002 IL_14190.1 | |
| IL_5HCR_292 | 1/2a/48:53, 1/2a/355:357 | No text annotation | homologous IL_4LFB_003 IL_68149.1 | |
| IL_5HCR_293 | 1/2a/55:57, 1/2a/352:353 | Minor groove platform | homologous IL_4LFB_004 IL_34520.1 | |
| IL_5HCR_294 | 1/2a/64:67, 1/2a/97:98 | Multiple bulged bases | homologous IL_6CZR_117 NA | |
| IL_5HCR_295 | 1/2a/68:70, 1/2a/94:96 | Isolated non-canonical cWW pair | homologous IL_4LFB_006 IL_01003.1 | |
| IL_5HCR_296 | 1/2a/123:126, 1/2a/227:228 | Multiple bulged bases | homologous IL_4LFB_007 IL_75289.1 | |
| IL_5HCR_297 | 1/2a/127:131, 1/2a/223:226 | No text annotation | homologous IL_4LFB_008 IL_60988.1 | |
| IL_5HCR_298 | 1/2a/143:148, 1/2a/163:169 | tWH-tWH-tHW-tHW | homologous IL_4LFB_009 IL_00680.1 | |
| IL_5HCR_300 | 1/2a/181:183, 1/2a/196:198 | Isolated non-canonical cWW pair | homologous IL_4LFB_010 IL_01003.1 | |
| IL_5HCR_301 | 1/2a/238:243, 1/2a/273:280 | Kink-turn with non-sequential stacking | homologous IL_4LFB_011 IL_46174.4 | |
| IL_5HCR_302 | 1/2a/245:248, 1/2a/270:271 | No text annotation | homologous IL_5J7L_015 NA | |
| IL_5HCR_303 | 1/2a/288:289, 1/2a/300:304 | C-loop | homologous IL_4LFB_013 IL_06671.1 | |
| IL_5HCR_304 | 1/2a/367:371, 1/2a/385:386 | C-loop | homologous IL_5J7L_018 NA | |
| IL_5HCR_305 | 1/2a/371:372, 1/2a/383:385 | Single bulged G | geometric IL_5J7L_019 NA | |
| IL_5HCR_306 | 1/2a/405:412, 1/2a/423:429 | No text annotation | homologous IL_4LFB_017 IL_62329.1 | |
| IL_5HCR_307 | 1/2a/441:445, 1/2a/468:473 | 6x5 Sarcin-Ricin; G-bulge | homologous IL_4LFB_018 IL_82100.1 | |
| IL_5HCR_308 | 1/2a/445:450, 1/2a/462:468 | No text annotation | geometric IL_4LFB_019 IL_31561.1 | |
| IL_5HCR_309 | 1/2a/488:495, 1/2a/524:525 | SSU/LSU pseudoknot | homologous IL_4LFB_020 IL_11411.1 | |
| IL_5HCR_310 | 1/2a/499:505, 1/2a/512:520 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_5HCR_311 | 1/2a/553:559, 1/2a/858:859 | No text annotation | homologous IL_4LFB_022 IL_20847.1 | |
| IL_5HCR_312 | 1/2a/564:568, 1/2a/741:745 | tSH-tHW-tHS | homologous IL_4LFB_023 IL_05821.1 | |
| IL_5HCR_313 | 1/2a/578:580, 1/2a/628:629 | Major groove platform | homologous IL_4LFB_024 IL_48076.7 | |
| IL_5HCR_314 | 1/2a/581:582, 1/2a/624:627 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_029 NA | |
| IL_5HCR_315 | 1/2a/589:596, 1/2a/612:617 | No text annotation | homologous IL_4LFB_026 IL_04211.1 | |
| IL_5HCR_316 | 1/2a/638:639, 1/2a/735:738 | Major groove platform; stack outside cWW | homologous IL_4LFB_027 IL_74641.1 | |
| IL_5HCR_317 | 1/2a/641:642, 1/2a/731:733 | Major groove platform | homologous IL_4LFB_028 IL_48076.7 | |
| IL_5HCR_318 | 1/2a/646:650, 1/2a/724:727 | Tandem non-canonical cWW pairs | homologous IL_4LFB_029 IL_15225.1 | |
| IL_5HCR_363 | 1/2a/657:661, 1/2a/697:701 | Triple non-canonical cWW pairs | homologous IL_5J7L_361 NA | |
| IL_5HCR_320 | 1/2a/667:672, 1/2a/683:691 | Kink-turn | homologous IL_4LFB_031 IL_95727.1 | |
| IL_5HCR_321 | 1/2a/758:762, 1/2a/788:789 | Left turn | homologous IL_4LFB_032 IL_29346.3 | |
| IL_5HCR_322 | 1/2a/763:767, 1/2a/783:787 | tSH-tHW-tHS | homologous IL_5J7L_037 NA | |
| IL_5HCR_323 | 1/2a/865:872, 1/2a/883:888 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4LFB_034 IL_84044.1 | |
| IL_5HCR_324 | 1/2a/900:901, 1/2a/1376:1378 | Single bulged A | homologous IL_5J7L_039 NA | |
| IL_5HCR_325 | 1/2a/903:905, 1/2a/1373:1374 | Single bulged G | homologous IL_4LFB_036 IL_28408.1 | |
| IL_5HCR_371 | 1/2a/911:913, 1/2a/1363:1367 | Minor groove platform | homologous IL_4LFB_037 IL_61370.1 | |
| IL_5HCR_327 | 1/2a/931:932, 1/2a/1208:1210 | Minor groove platform | homologous IL_4LFB_038 IL_34520.1 | |
| IL_5HCR_328 | 1/2a/971:975, 1/2a/1027:1028 | Minor groove platform | geometric IL_4LFB_039 IL_61370.1 | |
| IL_5HCR_330 | 1/2a/1031:1033, 1/2a/1190:1191 | Single bulged U | homologous IL_4LFB_042 IL_97561.1 | |
| IL_5HCR_331 | 1/2a/1035:1039, 1/2a/1186:1188 | Isolated cWS basepair | homologous IL_4LFB_044 IL_82453.1 | |
| IL_5HCR_332 | 1/2a/1040:1041, 1/2a/1181:1185 | Minor groove platform | homologous IL_4LFB_045 IL_24264.1 | |
| IL_5HCR_333 | 1/2a/1043:1044, 1/2a/1177:1179 | Single bulged U | geometric IL_4LFB_046 IL_97561.1 | |
| IL_5HCR_334 | 1/2a/1044:1046, 1/2a/1175:1177 | Isolated non-canonical cWW pair | homologous IL_4LFB_047 IL_68118.1 | |
| IL_5HCR_335 | 1/2a/1107:1110, 1/2a/1128:1132 | Minor groove platform | homologous IL_6CZR_158 NA | |
| IL_5HCR_336 | 1/2a/1112:1115, 1/2a/1125:1126 | Minor groove platform | homologous IL_4LFB_049 IL_87975.1 | |
| IL_5HCR_337 | 1/2a/1229:1235, 1/2a/1266:1272 | No text annotation | homologous IL_4LFB_051 IL_12056.1 | |
| IL_5HCR_338 | 1/2a/1237:1240, 1/2a/1259:1264 | 180 degree turn | geometric IL_4LFB_052 IL_08849.1 | |
| IL_5HCR_339 | 1/2a/1241:1244, 1/2a/1255:1258 | Double sheared | geometric IL_5J7L_256 NA | |
| IL_5HCR_340 | 1/2a/1285:1290, 1/2a/1311:1316 | No text annotation | homologous IL_4LFB_055 IL_57885.1 | |
| IL_5HCR_341 | 1/2a/1382:1384, 1/2a/1479:1482 | No text annotation | homologous IL_4LFB_056 IL_18228.1 | |
| IL_5HCR_342 | 1/2a/1384:1387, 1/2a/1475:1479 | No text annotation | geometric IL_4V88_464 NA | |
| IL_5HCR_343 | 1/2a/1388:1390, 1/2a/1472:1474 | Isolated non-canonical cWW pair | geometric IL_5MWI_007 NA | |
| IL_5HCR_365 | 1/2a/1395:1397, 1/2a/1464:1466 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 NA | |
| IL_5HCR_346 | 1/2a/1399:1402, 1/2a/1459:1462 | Double sheared | homologous IL_5J7L_062 NA | |
| IL_5HCR_347 | 1/2a/1414:1418, 1/2a/1444:1447 | UAA/GAN variation | geometric IL_4LFB_062 IL_77691.6 | |
| IL_5HCR_348 | 1/2a/1418:1420, 1/2a/1442:1444 | Isolated non-canonical cWW pair | homologous IL_4LFB_063 IL_01003.1 | |
| IL_5HCR_349 | 1/2a/1423:1428, 1/2a/1437:1439 | No text annotation | homologous IL_4LFB_064 IL_93811.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_5HCR_003 | Major groove platform with extra cWW | ||
| IL_5HCR_009 | No text annotation | ||
| IL_5HCR_026 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_5HCR_029 | Isolated cWS basepair | ||
| IL_5HCR_042 | Isolated cWH basepair | ||
| IL_5HCR_094 | Isolated non-canonical cWW pair | ||
| IL_5HCR_106 | Not an internal loop | ||
| IL_5HCR_108 | No text annotation | ||
| IL_5HCR_117 | No text annotation | ||
| IL_5HCR_120 | Isolated cWH basepair | ||
| IL_5HCR_353 | Single bulged G, near cWW | ||
| IL_5HCR_130 | No text annotation | ||
| IL_5HCR_135 | Isolated non-canonical cWW pair | ||
| IL_5HCR_142 | No text annotation | ||
| IL_5HCR_149 | No text annotation | ||
| IL_5HCR_152 | No text annotation | ||
| IL_5HCR_153 | No text annotation | ||
| IL_5HCR_169 | Not an internal loop | ||
| IL_5HCR_177 | Major groove platform with extra cWW | ||
| IL_5HCR_184 | No text annotation | ||
| IL_5HCR_190 | Isolated non-canonical cWW pair | ||
| IL_5HCR_205 | Isolated cWS basepair | ||
| IL_5HCR_216 | Isolated non-canonical cWW pair | ||
| IL_5HCR_229 | No text annotation | ||
| IL_5HCR_360 | No text annotation | ||
| IL_5HCR_260 | Isolated non-canonical cWW pair | ||
| IL_5HCR_261 | No text annotation | ||
| IL_5HCR_273 | Isolated non-canonical cWW pair | ||
| IL_5HCR_286 | Isolated cWH basepair | ||
| IL_5HCR_299 | Isolated non-canonical cWW pair | ||
| IL_5HCR_362 | No text annotation | ||
| IL_5HCR_319 | No text annotation | ||
| IL_5HCR_326 | No text annotation | ||
| IL_5HCR_329 | No text annotation | ||
| IL_5HCR_364 | No text annotation | ||
| IL_5HCR_344 | Not an internal loop | ||
| IL_5HCR_345 | Tandem non-canonical cWW pairs |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_5HCR_033 | 1/1A/29:30, 1/1A/499:506, 1/1A/533:534 | No text annotation | geometric J3_8VTW_036 NA | |
| J3_5HCR_034 | 1/1A/29:30, 1/1A/499:509, 1/1A/520:534 | No text annotation | homologous J3_9DFE_002 J3_17917.1 | |
| J3_5HCR_035 | 1/1A/31:34, 1/1A/470:486, 1/1A/493:498 | No text annotation | homologous J3_9DFE_003 J3_07616.1 | |
| J3_5HCR_036 | 1/1A/54:55, 1/1A/68:74, 1/1A/107:111 | No text annotation | homologous J3_9DFE_004 J3_01004.1 | |
| J3_5HCR_037 | 1/1A/257:261, 1/1A/281:288, 1/1A/395:396 | No text annotation | homologous J3_9DFE_005 J3_97971.2 | |
| J3_5HCR_038 | 1/1A/320:324, 1/1A/339:348, 1/1A/360:364 | No text annotation | homologous J3_9DFE_006 J3_77124.1 | |
| J3_5HCR_001 | 1/1A/729:735, 1/1A/819:821, 1/1A/837:840 | No text annotation | homologous J3_7RQB_004 NA | |
| J3_5HCR_002 | 1/1A/744:746, 1/1A/778:782, 1/1A/806:809 | No text annotation | homologous J3_7RQB_005 NA | |
| J3_5HCR_003 | 1/1A/1343:1348, 1/1A/1670:1672, 1/1A/1685:1688 | No text annotation | homologous J3_7RQB_007 NA | |
| J3_5HCR_004 | 1/1A/1351:1354, 1/1A/1650:1656, 1/1A/1665:1667 | No text annotation | homologous J3_7RQB_008 NA | |
| J3_5HCR_039 | 1/1A/1389:1395, 1/1A/1426:1430, 1/1A/1447:1448 | No text annotation | homologous J3_9DFE_012 J3_94309.1 | |
| J3_5HCR_040 | 1/1A/1469:1474, 1/1A/1610:1611, 1/1A/1614:1620 | No text annotation | homologous J3_9DFE_013 J3_34864.3 | |
| J3_5HCR_005 | 1/1A/2112:2114, 1/1A/2217:2221, 1/1A/2234:2239 | No text annotation | homologous J3_7RQB_010 NA | |
| J3_5HCR_041 | 1/1A/2293:2295, 1/1A/2395:2406, 1/1A/2432:2438 | No text annotation | homologous J3_9DFE_015 J3_04772.1 | |
| J3_5HCR_006 | 1/1A/2306:2308, 1/1A/2332:2334, 1/1A/2343:2348 | No text annotation | homologous J3_7RQB_011 NA | |
| J3_5HCR_007 | 1/1A/2528:2531, 1/1A/2556:2558, 1/1A/2572:2578 | No text annotation | homologous J3_7RQB_012 NA | |
| J3_5HCR_008 | 1/1A/2801:2803, 1/1A/2815:2820, 1/1A/2898:2902 | No text annotation | homologous J3_7RQB_013 NA | |
| J3_5HCR_042 | 1/1A/2823:2824, 1/1A/2840:2845, 1/1A/2891:2895 | No text annotation | homologous J3_4WF9_021 J3_76911.2 | |
| J3_5HCR_043 | 1/1B/11:16, 1/1B/68:69, 1/1B/108:110 | No text annotation | homologous J3_9DFE_020 J3_26985.1 | |
| J3_5HCR_044 | 1/1a/47:48, 1/1a/357:363, 1/1a/389:391 | No text annotation | geometric J3_8C3A_082 NA | |
| J3_5HCR_045 | 1/1a/47:53, 1/1a/355:363, 1/1a/389:391 | No text annotation | homologous J3_4LFB_014 J3_63856.1 | |
| J3_5HCR_046 | 1/1a/570:572, 1/1a/635:638, 1/1a/738:739 | No text annotation | geometric J3_5J7L_002 NA | |
| J3_5HCR_047 | 1/1a/570:572, 1/1a/635:639, 1/1a/735:739 | No text annotation | homologous J3_4LFB_015 J3_17385.5 | |
| J3_5HCR_048 | 1/1a/656:657, 1/1a/701:709, 1/1a/716:718 | No text annotation | homologous J3_6CZR_017 NA | |
| J3_5HCR_009 | 1/1a/810:813, 1/1a/835:839, 1/1a/846:852 | No text annotation | homologous J3_4LFB_001 J3_02285.1 | |
| J3_5HCR_010 | 1/1a/914:917, 1/1a/1326:1332, 1/1a/1355:1362 | No text annotation | homologous J3_4LFB_002 J3_85722.1 | |
| J3_5HCR_011 | 1/1a/921:924, 1/1a/1217:1219, 1/1a/1319:1322 | No text annotation | homologous J3_4LFB_003 J3_44359.1 | |
| J3_5HCR_012 | 1/1a/933:940, 1/1a/951:962, 1/1a/1203:1207 | No text annotation | homologous J3_4LFB_004 J3_88451.1 | |
| J3_5HCR_013 | 1/1a/968:971, 1/1a/1028:1030, 1/1a/1192:1197 | No text annotation | homologous J3_4LFB_005 J3_84394.1 | |
| J3_5HCR_049 | 1/1a/968:975, 1/1a/1027:1030, 1/1a/1192:1197 | No text annotation | homologous J3_6CZR_063 NA | |
| J3_5HCR_014 | 1/1a/1046:1051, 1/1a/1090:1096, 1/1a/1169:1175 | No text annotation | homologous J3_4LFB_007 J3_01343.1 | |
| J3_5HCR_069 | 1/1a/1056:1057, 1/1a/1066:1069, 1/1a/1082:1085 | No text annotation | homologous J3_4LFB_017 J3_11018.1 | |
| J3_5HCR_015 | 1/1a/1099:1101, 1/1a/1138:1144, 1/1a/1157:1166 | No text annotation | homologous J3_4LFB_018 J3_40706.1 | |
| J3_5HCR_016 | 1/1a/1219:1223, 1/1a/1278:1285, 1/1a/1316:1319 | No text annotation | homologous J3_4LFB_009 J3_03192.1 | |
| J3_5HCR_051 | 1/2A/29:30, 1/2A/499:506, 1/2A/533:534 | No text annotation | geometric J3_8VTW_036 NA | |
| J3_5HCR_052 | 1/2A/29:30, 1/2A/499:509, 1/2A/520:534 | No text annotation | homologous J3_9DFE_002 J3_17917.1 | |
| J3_5HCR_053 | 1/2A/31:34, 1/2A/470:486, 1/2A/493:498 | No text annotation | homologous J3_9DFE_003 J3_07616.1 | |
| J3_5HCR_054 | 1/2A/54:55, 1/2A/68:74, 1/2A/107:111 | No text annotation | homologous J3_9DFE_004 J3_01004.1 | |
| J3_5HCR_055 | 1/2A/257:261, 1/2A/281:288, 1/2A/395:396 | No text annotation | homologous J3_9DFE_005 J3_97971.2 | |
| J3_5HCR_056 | 1/2A/320:324, 1/2A/339:348, 1/2A/360:364 | No text annotation | homologous J3_9DFE_006 J3_77124.1 | |
| J3_5HCR_017 | 1/2A/729:735, 1/2A/819:821, 1/2A/837:840 | No text annotation | homologous J3_7RQB_004 NA | |
| J3_5HCR_018 | 1/2A/744:746, 1/2A/778:782, 1/2A/806:809 | No text annotation | homologous J3_7RQB_005 NA | |
| J3_5HCR_070 | 1/2A/1100:1102, 1/2A/1126:1136, 1/2A/1145:1149 | No text annotation | ||
| J3_5HCR_020 | 1/2A/1343:1348, 1/2A/1670:1672, 1/2A/1685:1688 | No text annotation | homologous J3_7RQB_007 NA | |
| J3_5HCR_021 | 1/2A/1351:1354, 1/2A/1650:1656, 1/2A/1665:1667 | No text annotation | homologous J3_7RQB_008 NA | |
| J3_5HCR_057 | 1/2A/1389:1395, 1/2A/1426:1430, 1/2A/1447:1448 | No text annotation | homologous J3_9DFE_012 J3_94309.1 | |
| J3_5HCR_058 | 1/2A/1469:1474, 1/2A/1610:1611, 1/2A/1614:1620 | No text annotation | homologous J3_9DFE_013 J3_34864.3 | |
| J3_5HCR_022 | 1/2A/2112:2114, 1/2A/2217:2221, 1/2A/2234:2239 | No text annotation | homologous J3_7RQB_010 NA | |
| J3_5HCR_059 | 1/2A/2293:2295, 1/2A/2395:2406, 1/2A/2432:2438 | No text annotation | homologous J3_9DFE_015 J3_04772.1 | |
| J3_5HCR_023 | 1/2A/2306:2308, 1/2A/2332:2334, 1/2A/2343:2348 | No text annotation | homologous J3_7RQB_011 NA | |
| J3_5HCR_024 | 1/2A/2528:2531, 1/2A/2556:2558, 1/2A/2572:2578 | No text annotation | homologous J3_7RQB_012 NA | |
| J3_5HCR_060 | 1/2A/2823:2824, 1/2A/2840:2845, 1/2A/2891:2895 | No text annotation | homologous J3_4WF9_021 J3_76911.2 | |
| J3_5HCR_061 | 1/2B/11:16, 1/2B/68:69, 1/2B/108:110 | No text annotation | homologous J3_9DFE_020 J3_26985.1 | |
| J3_5HCR_062 | 1/2a/47:48, 1/2a/357:365, 1/2a/388:391 | No text annotation | ||
| J3_5HCR_063 | 1/2a/47:53, 1/2a/355:365, 1/2a/388:391 | No text annotation | ||
| J3_5HCR_064 | 1/2a/570:572, 1/2a/635:638, 1/2a/738:739 | No text annotation | geometric J3_4LFB_011 J3_01633.1 | |
| J3_5HCR_065 | 1/2a/570:572, 1/2a/635:639, 1/2a/735:739 | No text annotation | homologous J3_4LFB_015 J3_17385.5 | |
| J3_5HCR_066 | 1/2a/656:657, 1/2a/701:709, 1/2a/716:718 | No text annotation | homologous J3_6CZR_017 NA | |
| J3_5HCR_025 | 1/2a/810:813, 1/2a/835:839, 1/2a/846:852 | No text annotation | homologous J3_4LFB_001 J3_02285.1 | |
| J3_5HCR_026 | 1/2a/914:917, 1/2a/1326:1332, 1/2a/1355:1362 | No text annotation | homologous J3_4LFB_002 J3_85722.1 | |
| J3_5HCR_027 | 1/2a/921:924, 1/2a/1217:1219, 1/2a/1319:1322 | No text annotation | homologous J3_4LFB_003 J3_44359.1 | |
| J3_5HCR_028 | 1/2a/933:940, 1/2a/951:962, 1/2a/1203:1207 | No text annotation | homologous J3_4LFB_004 J3_88451.1 | |
| J3_5HCR_029 | 1/2a/968:971, 1/2a/1028:1030, 1/2a/1192:1197 | No text annotation | homologous J3_4LFB_005 J3_84394.1 | |
| J3_5HCR_067 | 1/2a/968:975, 1/2a/1027:1030, 1/2a/1192:1197 | No text annotation | homologous J3_4LFB_016 J3_28881.1 | |
| J3_5HCR_030 | 1/2a/1046:1051, 1/2a/1090:1096, 1/2a/1169:1175 | No text annotation | homologous J3_4LFB_007 J3_01343.1 | |
| J3_5HCR_068 | 1/2a/1056:1057, 1/2a/1066:1070, 1/2a/1081:1085 | No text annotation | homologous J3_6CZR_024 NA | |
| J3_5HCR_031 | 1/2a/1099:1101, 1/2a/1138:1144, 1/2a/1157:1166 | No text annotation | homologous J3_4LFB_018 J3_40706.1 | |
| J3_5HCR_032 | 1/2a/1219:1223, 1/2a/1278:1285, 1/2a/1316:1319 | No text annotation | homologous J3_4LFB_009 J3_03192.1 | |
| J4_5HCR_001 | 1/1A/256:257, 1/1A/396:401, 1/1A/425:432, 1/1A/447:450 | No text annotation | homologous J4_9DFE_001 J4_94698.1 | |
| J4_5HCR_002 | 1/1A/320:324, 1/1A/339:342, 1/1A/346:348, 1/1A/360:364 | No text annotation | homologous J4_9DFE_002 J4_16174.1 | |
| J4_5HCR_003 | 1/1A/1315:1321, 1/1A/1339:1340, 1/1A/1691:1694, 1/1A/2030:2031 | No text annotation | homologous J4_9DFE_003 J4_64571.6 | |
| J4_5HCR_004 | 1/1A/1355:1359, 1/1A/1383:1388, 1/1A/1449:1450, 1/1A/1642:1649 | No text annotation | homologous J4_9DFE_004 J4_77353.1 | |
| J4_5HCR_005 | 1/1A/1358:1359, 1/1A/1383:1388, 1/1A/1449:1450, 1/1A/1642:1648 | No text annotation | homologous J4_9DFE_005 J4_48150.1 | |
| J4_5HCR_006 | 1/1A/1489:1491, 1/1A/1512:1513, 1/1A/1570:1571, 1/1A/1592:1593 | No text annotation | homologous J4_9DFE_006 J4_75575.1 | |
| J4_5HCR_007 | 1/1A/1802:1806, 1/1A/1818:1822, 1/1A/1857:1860, 1/1A/1996:2000 | No text annotation | homologous J4_9DFE_007 J4_61477.6 | |
| J4_5HCR_008 | 1/1A/1863:1865, 1/1A/1926:1927, 1/1A/1945:1954, 1/1A/1988:1993 | No text annotation | homologous J4_9DFE_008 J4_42306.1 | |
| J4_5HCR_009 | 1/1A/2296:2300, 1/1A/2354:2358, 1/1A/2381:2383, 1/1A/2392:2394 | No text annotation | homologous J4_9DFE_009 J4_98139.1 | |
| J4_5HCR_010 | 1/1A/2654:2657, 1/1A/2685:2687, 1/1A/2743:2747, 1/1A/2781:2783 | No text annotation | homologous J4_9DFE_010 J4_77044.5 | |
| J4_5HCR_011 | 1/1a/109:116, 1/1a/235:236, 1/1a/282:285, 1/1a/307:308 | No text annotation | homologous J4_4LFB_001 J4_90044.1 | |
| J4_5HCR_012 | 1/1a/137:139, 1/1a/173:178, 1/1a/201:205, 1/1a/215:217 | No text annotation | homologous J4_4LFB_002 J4_88771.1 | |
| J4_5HCR_013 | 1/1a/559:561, 1/1a/748:753, 1/1a/794:805, 1/1a/857:858 | No text annotation | homologous J4_4LFB_003 J4_14595.1 | |
| J4_5HCR_014 | 1/1x/7:10, 1/1x/25:27, 1/1x/43:49, 1/1x/65:66 | tRNA junction | homologous J4_5E81_027 NA | |
| J4_5HCR_015 | 1/2A/256:257, 1/2A/396:401, 1/2A/425:432, 1/2A/447:450 | No text annotation | homologous J4_9DFE_001 J4_94698.1 | |
| J4_5HCR_016 | 1/2A/320:324, 1/2A/339:342, 1/2A/346:348, 1/2A/360:364 | No text annotation | homologous J4_9DFE_002 J4_16174.1 | |
| J4_5HCR_017 | 1/2A/1315:1321, 1/2A/1339:1340, 1/2A/1691:1694, 1/2A/2030:2031 | No text annotation | homologous J4_9DFE_003 J4_64571.6 | |
| J4_5HCR_018 | 1/2A/1355:1359, 1/2A/1383:1388, 1/2A/1449:1450, 1/2A/1642:1649 | No text annotation | homologous J4_9DFE_004 J4_77353.1 | |
| J4_5HCR_019 | 1/2A/1358:1359, 1/2A/1383:1388, 1/2A/1449:1450, 1/2A/1642:1648 | No text annotation | homologous J4_9DFE_005 J4_48150.1 | |
| J4_5HCR_020 | 1/2A/1489:1491, 1/2A/1512:1513, 1/2A/1570:1571, 1/2A/1592:1593 | No text annotation | homologous J4_9DFE_006 J4_75575.1 | |
| J4_5HCR_021 | 1/2A/1802:1806, 1/2A/1818:1822, 1/2A/1857:1860, 1/2A/1996:2000 | No text annotation | homologous J4_9DFE_007 J4_61477.6 | |
| J4_5HCR_022 | 1/2A/1863:1865, 1/2A/1926:1927, 1/2A/1945:1954, 1/2A/1988:1993 | No text annotation | homologous J4_9DFE_008 J4_42306.1 | |
| J4_5HCR_023 | 1/2A/2296:2300, 1/2A/2354:2358, 1/2A/2381:2383, 1/2A/2392:2394 | No text annotation | homologous J4_9DFE_009 J4_98139.1 | |
| J4_5HCR_024 | 1/2A/2654:2657, 1/2A/2685:2687, 1/2A/2743:2747, 1/2A/2781:2783 | No text annotation | homologous J4_9DFE_010 J4_77044.5 | |
| J4_5HCR_025 | 1/2a/109:116, 1/2a/235:236, 1/2a/282:285, 1/2a/307:308 | No text annotation | homologous J4_4LFB_001 J4_90044.1 | |
| J4_5HCR_026 | 1/2a/137:139, 1/2a/173:178, 1/2a/201:205, 1/2a/215:217 | No text annotation | homologous J4_4LFB_002 J4_88771.1 | |
| J4_5HCR_027 | 1/2a/559:561, 1/2a/748:753, 1/2a/794:805, 1/2a/857:858 | No text annotation | homologous J4_4LFB_003 J4_14595.1 | |
| J4_5HCR_029 | 1/2x/7:10, 1/2x/25:27, 1/2x/43:49, 1/2x/65:66 | tRNA junction | homologous J4_5E81_027 NA | |
| J5_5HCR_001 | 1/1A/45:52, 1/1A/113:118, 1/1A/127:128, 1/1A/147:149, 1/1A/164:166 | No text annotation | homologous J5_9DFE_001 J5_27223.1 | |
| J5_5HCR_002 | 1/1A/256:261, 1/1A/281:288, 1/1A/395:401, 1/1A/425:432, 1/1A/447:450 | No text annotation | ||
| J5_5HCR_003 | 1/1A/555:557, 1/1A/582:586, 1/1A/599:601, 1/1A/1306:1307, 1/1A/2038:2039 | No text annotation | homologous J5_9DFE_003 J5_43153.6 | |
| J5_5HCR_004 | 1/1A/606:611, 1/1A/714:717, 1/1A/855:858, 1/1A/1239:1240, 1/1A/1295:1301 | No text annotation | homologous J5_9DFE_004 J5_74302.6 | |
| J5_5HCR_005 | 1/1A/1720:1728, 1/1A/1752:1753, 1/1A/1781:1782, 1/1A/1786:1794, 1/1A/2009:2011 | No text annotation | homologous J5_9DFE_005 J5_99177.1 | |
| J5_5HCR_006 | 1/1A/2078:2085, 1/1A/2457:2464, 1/1A/2511:2518, 1/1A/2593:2599, 1/1A/2617:2622 | No text annotation | ||
| J5_5HCR_007 | 1/1A/2095:2098, 1/1A/2254:2257, 1/1A/2269:2270, 1/1A/2292:2293, 1/1A/2438:2446 | No text annotation | homologous J5_9DFE_007 J5_39529.2 | |
| J5_5HCR_020 | 1/1a/37:40, 1/1a/399:402, 1/1a/432:437, 1/1a/477:484, 1/1a/529:532 | No text annotation | homologous J5_4LFB_001 J5_70703.1 | |
| J5_5HCR_009 | 1/1a/59:62, 1/1a/100:107, 1/1a/310:312, 1/1a/333:335, 1/1a/346:350 | No text annotation | homologous J5_6CZR_021 NA | |
| J5_5HCR_010 | 1/2A/45:52, 1/2A/113:118, 1/2A/127:128, 1/2A/147:149, 1/2A/164:166 | No text annotation | homologous J5_9DFE_001 J5_27223.1 | |
| J5_5HCR_011 | 1/2A/256:261, 1/2A/281:288, 1/2A/395:401, 1/2A/425:432, 1/2A/447:450 | No text annotation | ||
| J5_5HCR_012 | 1/2A/555:557, 1/2A/582:586, 1/2A/599:601, 1/2A/1306:1307, 1/2A/2038:2039 | No text annotation | homologous J5_9DFE_003 J5_43153.6 | |
| J5_5HCR_013 | 1/2A/606:611, 1/2A/714:717, 1/2A/855:858, 1/2A/1239:1240, 1/2A/1295:1301 | No text annotation | homologous J5_9DFE_004 J5_74302.6 | |
| J5_5HCR_014 | 1/2A/623:626, 1/2A/648:652, 1/2A/659:662, 1/2A/674:679, 1/2A/698:702 | No text annotation | ||
| J5_5HCR_015 | 1/2A/1720:1728, 1/2A/1752:1753, 1/2A/1781:1782, 1/2A/1786:1794, 1/2A/2009:2011 | No text annotation | homologous J5_9DFE_005 J5_99177.1 | |
| J5_5HCR_016 | 1/2A/2078:2085, 1/2A/2457:2464, 1/2A/2511:2518, 1/2A/2593:2599, 1/2A/2617:2622 | No text annotation | ||
| J5_5HCR_017 | 1/2A/2095:2098, 1/2A/2254:2257, 1/2A/2269:2270, 1/2A/2292:2293, 1/2A/2438:2446 | No text annotation | homologous J5_9DFE_007 J5_39529.2 | |
| J5_5HCR_018 | 1/2a/37:40, 1/2a/399:402, 1/2a/432:437, 1/2a/477:484, 1/2a/529:532 | No text annotation | homologous J5_4LFB_001 J5_70703.1 | |
| J5_5HCR_019 | 1/2a/59:62, 1/2a/100:107, 1/2a/310:312, 1/2a/333:335, 1/2a/346:350 | No text annotation | homologous J5_4LFB_002 J5_58574.1 | |
| J6_5HCR_001 | 1/1A/43:44, 1/1A/167:171, 1/1A/202:212, 1/1A/219:223, 1/1A/250:254, 1/1A/452:459 | No text annotation | ||
| J6_5HCR_002 | 1/1A/2095:2098, 1/1A/2254:2257, 1/1A/2269:2270, 1/1A/2292:2295, 1/1A/2395:2406, 1/1A/2432:2446 | No text annotation | ||
| J6_5HCR_003 | 1/2A/43:44, 1/2A/167:171, 1/2A/202:212, 1/2A/219:223, 1/2A/250:254, 1/2A/452:459 | No text annotation | ||
| J6_5HCR_004 | 1/2A/2095:2098, 1/2A/2254:2257, 1/2A/2269:2270, 1/2A/2292:2295, 1/2A/2395:2406, 1/2A/2432:2446 | No text annotation | ||
| J7_5HCR_001 | 1/1A/7:14, 1/1A/549:555, 1/1A/2039:2044, 1/1A/2061:2064, 1/1A/2636:2641, 1/1A/2800:2801, 1/1A/2902:2903 | No text annotation | ||
| J7_5HCR_002 | 1/1A/863:868, 1/1A/881:882, 1/1A/987:990, 1/1A/1015:1021, 1/1A/1032:1036, 1/1A/1208:1209, 1/1A/1229:1234 | No text annotation | ||
| J7_5HCR_003 | 1/2A/7:14, 1/2A/549:555, 1/2A/2039:2044, 1/2A/2061:2064, 1/2A/2636:2641, 1/2A/2800:2801, 1/2A/2902:2903 | No text annotation | ||
| J7_5HCR_004 | 1/2A/863:868, 1/2A/881:882, 1/2A/987:990, 1/2A/1015:1021, 1/2A/1032:1036, 1/2A/1208:1209, 1/2A/1229:1234 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_5HCR_050 | No text annotation | ||
| J3_5HCR_019 | No text annotation | ||
| J4_5HCR_028 | tRNA junction | ||
| J5_5HCR_008 | No text annotation |
Coloring options: