HL_5HCR_013
3D structure
- PDB id
- 5HCR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of antimicrobial peptide Oncocin 10wt bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GUUCGUGGAGC
- Length
- 11 nucleotides
- Bulged bases
- 5HCR|1|1A|G|412
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5HCR_013 not in the Motif Atlas
- Homologous match to HL_7RQB_013
- Geometric discrepancy: 0.0492
- The information below is about HL_7RQB_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_91503.4
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
5HCR|1|1A|G|408
5HCR|1|1A|U|409
5HCR|1|1A|U|410
5HCR|1|1A|C|411
5HCR|1|1A|G|412
5HCR|1|1A|U|413
5HCR|1|1A|G|414
5HCR|1|1A|G|415
5HCR|1|1A|A|416
5HCR|1|1A|G|417
5HCR|1|1A|C|418
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 11
- 50S ribosomal protein L28
- Chain 1P
- 50S ribosomal protein L15
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