HL_5HCR_073

3D structure

PDB id

5HCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Oncocin 10wt bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUUUG

Length

5 nucleotides

Bulged bases

5HCR|1|1a|U|211

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5HCR_073 not in the Motif Atlas

Homologous match to HL_6CZR_234

Geometric discrepancy: 0.5291

The information below is about HL_6CZR_234

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.1

Basepair signature

cWW-F

Number of instances in this motif group

51

Unit IDs

5HCR|1|1a|C|208
5HCR|1|1a|U|209
5HCR|1|1a|U|210
5HCR|1|1a|U|211
5HCR|1|1a|G|212

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains