HL_5HCR_160

3D structure

PDB id

5HCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Oncocin 10wt bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGCAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5HCR_160 not in the Motif Atlas

Homologous match to HL_7RQB_056

Geometric discrepancy: 0.0791

The information below is about HL_7RQB_056

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_12078.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

31

Unit IDs

5HCR|1|2A|C|2335
5HCR|1|2A|G|2336
5HCR|1|2A|C|2337
5HCR|1|2A|A|2338
5HCR|1|2A|A|2339
5HCR|1|2A|G|2340
5HCR|1|2A|G|2341
5HCR|1|2A|G|2342

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 20

50S ribosomal protein L27

Chain 2G

50S ribosomal protein L5

Chain 2Q

50S ribosomal protein L16

Chain 2x

Transfer RNA; tRNA