HL_5HCR_171

3D structure

PDB id

5HCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Oncocin 10wt bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGCAGCC

Length

7 nucleotides

Bulged bases

5HCR|1|2A|A|2811

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5HCR_171 not in the Motif Atlas

Homologous match to IL_4WF9_105

Geometric discrepancy: 0.5242

The information below is about IL_4WF9_105

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5HCR|1|2A|G|2804
5HCR|1|2A|G|2805
5HCR|1|2A|C|2806
5HCR|1|2A|A|2811
5HCR|1|2A|G|2812
5HCR|1|2A|C|2813
5HCR|1|2A|C|2814

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains