HL_5HCR_212

3D structure

PDB id

5HCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Oncocin 10wt bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CCCGACGAGGG

Length

11 nucleotides

Bulged bases

5HCR|1|1a|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5HCR|1|1a|C|451
5HCR|1|1a|C|452
5HCR|1|1a|C|453
5HCR|1|1a|G|454
5HCR|1|1a|A|455
5HCR|1|1a|C|456
5HCR|1|1a|G|457
5HCR|1|1a|A|458
5HCR|1|1a|G|459
5HCR|1|1a|G|460
5HCR|1|1a|G|461

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1p

30S ribosomal protein S16