HL_5HD1_042

3D structure

PDB id

5HD1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Pyrrhocoricin bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

UGAUGAG

Length

7 nucleotides

Bulged bases

5HD1|1|1A|U|1767

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5HD1_042 not in the Motif Atlas

Homologous match to HL_7RQB_043

Geometric discrepancy: 0.2033

The information below is about HL_7RQB_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43656.2

Basepair signature

cWW-tSH

Number of instances in this motif group

8

Unit IDs

5HD1|1|1A|U|1764
5HD1|1|1A|G|1765
5HD1|1|1A|A|1766
5HD1|1|1A|U|1767
5HD1|1|1A|G|1768
5HD1|1|1A|A|1769
5HD1|1|1A|G|1770

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains