HL_5HD1_047
3D structure
- PDB id
- 5HD1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of antimicrobial peptide Pyrrhocoricin bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- GUAACUAUAAC
- Length
- 11 nucleotides
- Bulged bases
- 5HD1|1|1A|A|1934
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5HD1_047 not in the Motif Atlas
- Geometric match to HL_5TBW_049
- Geometric discrepancy: 0.1385
- The information below is about HL_5TBW_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_84702.1
- Basepair signature
- cWW-F-F-tHW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
5HD1|1|1A|G|1931
5HD1|1|1A|U|1932
5HD1|1|1A|A|1933
5HD1|1|1A|A|1934
5HD1|1|1A|C|1935
5HD1|1|1A|U|1936
5HD1|1|1A|A|1937
5HD1|1|1A|U|1938
5HD1|1|1A|A|1939
5HD1|1|1A|A|1940
5HD1|1|1A|C|1941
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1a
- Small subunit ribosomal RNA; SSU rRNA
- Chain 1x
- Transfer RNA; tRNA
Coloring options: