HL_5HD1_143

3D structure

PDB id

5HD1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Pyrrhocoricin bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GCAAAUC

Length

7 nucleotides

Bulged bases

5HD1|1|2A|C|1538, 5HD1|1|2A|U|1542

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5HD1_143 not in the Motif Atlas

Homologous match to HL_7RQB_038

Geometric discrepancy: 0.1386

The information below is about HL_7RQB_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_46680.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

27

Unit IDs

5HD1|1|2A|G|1537
5HD1|1|2A|C|1538
5HD1|1|2A|A|1539
5HD1|1|2A|A|1540
5HD1|1|2A|A|1541
5HD1|1|2A|U|1542
5HD1|1|2A|C|1543

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2