HL_5HD1_193

3D structure

PDB id

5HD1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Pyrrhocoricin bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CGAAGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5HD1_193 not in the Motif Atlas

Homologous match to HL_5J7L_016

Geometric discrepancy: 0.1055

The information below is about HL_5J7L_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

5HD1|1|2a|C|710
5HD1|1|2a|G|711
5HD1|1|2a|A|712
5HD1|1|2a|A|713
5HD1|1|2a|G|714
5HD1|1|2a|G|715

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2o

30S ribosomal protein S15

Chain 2r

30S ribosomal protein S18