HL_5HKV_010

3D structure

PDB id

5HKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

5HKV|1|X|A|354

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5HKV_010 not in the Motif Atlas

Homologous match to HL_4WF9_010

Geometric discrepancy: 0.1512

The information below is about HL_4WF9_010

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_13999.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

5HKV|1|X|C|348
5HKV|1|X|U|349
5HKV|1|X|G|350
5HKV|1|X|G|351
5HKV|1|X|A|352
5HKV|1|X|A|353
5HKV|1|X|A|354
5HKV|1|X|G|355

Current chains

Chain X

23s ribosomal RNA

Nearby chains

Chain R

50S ribosomal protein L24