HL_5HKV_012

3D structure

PDB id

5HKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

GUAAUAAUC

Length

9 nucleotides

Bulged bases

5HKV|1|X|A|372, 5HKV|1|X|A|373, 5HKV|1|X|U|374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5HKV_012 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.1135

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

5HKV|1|X|G|370
5HKV|1|X|U|371
5HKV|1|X|A|372
5HKV|1|X|A|373
5HKV|1|X|U|374
5HKV|1|X|A|375
5HKV|1|X|A|376
5HKV|1|X|U|377
5HKV|1|X|C|378

Current chains

Chain X

23s ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L4

Chain R

50S ribosomal protein L24