HL_5HKV_013

3D structure

PDB id

5HKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

AGCACGUGAAAUU

Length

13 nucleotides

Bulged bases

5HKV|1|X|G|432

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5HKV_013 not in the Motif Atlas

Homologous match to HL_4WF9_013

Geometric discrepancy: 0.1467

The information below is about HL_4WF9_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69139.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5HKV|1|X|A|427
5HKV|1|X|G|428
5HKV|1|X|C|429
5HKV|1|X|A|430
5HKV|1|X|C|431
5HKV|1|X|G|432
5HKV|1|X|U|433
5HKV|1|X|G|434
5HKV|1|X|A|435
5HKV|1|X|A|436
5HKV|1|X|A|437
5HKV|1|X|U|438
5HKV|1|X|U|439

Current chains

Chain X

23s ribosomal RNA

Nearby chains

Chain U

50S ribosomal protein L28