HL_5HKV_018

3D structure

PDB id

5HKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

UUUUGUAGAA

Length

10 nucleotides

Bulged bases

5HKV|1|X|A|617

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5HKV_018 not in the Motif Atlas

Geometric match to HL_4WF9_018

Geometric discrepancy: 0.0956

The information below is about HL_4WF9_018

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.3

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

5HKV|1|X|U|609
5HKV|1|X|U|610
5HKV|1|X|U|611
5HKV|1|X|U|612
5HKV|1|X|G|613
5HKV|1|X|U|614
5HKV|1|X|A|615
5HKV|1|X|G|616
5HKV|1|X|A|617
5HKV|1|X|A|618

Current chains

Chain X

23s ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain I

50S ribosomal protein L15

Chain N

50S ribosomal protein L20

Chain O

50S ribosomal protein L21

Chain Z

50S ribosomal protein L32