HL_5HKV_021

3D structure

PDB id

5HKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

UGAAAG*G

Length

7 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5HKV_021 not in the Motif Atlas

Homologous match to HL_4WF9_021

Geometric discrepancy: 0.1264

The information below is about HL_4WF9_021

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

5HKV|1|X|U|686
5HKV|1|X|G|687
5HKV|1|X|A|688
5HKV|1|X|A|689
5HKV|1|X|A|691
5HKV|1|X|G|692
*
5HKV|1|X|G|692

Current chains

Chain X

23s ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L35