HL_5HKV_027

3D structure

PDB id

5HKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

UGAUAAGG

Length

8 nucleotides

Bulged bases

5HKV|1|X|U|1002, 5HKV|1|X|G|1005

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5HKV_027 not in the Motif Atlas

Homologous match to HL_4WF9_027

Geometric discrepancy: 0.0631

The information below is about HL_4WF9_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

5HKV|1|X|U|999
5HKV|1|X|G|1000
5HKV|1|X|A|1001
5HKV|1|X|U|1002
5HKV|1|X|A|1003
5HKV|1|X|A|1004
5HKV|1|X|G|1005
5HKV|1|X|G|1006

Current chains

Chain X

23s ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L16

Chain Y

5S ribosomal RNA; 5S rRNA