HL_5HKV_048

3D structure

PDB id

5HKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

AUUCGGCU

Length

8 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5HKV_048 not in the Motif Atlas

Geometric match to HL_8KAH_003

Geometric discrepancy: 0.3725

The information below is about HL_8KAH_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89457.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

2

Unit IDs

5HKV|1|X|A|2123
5HKV|1|X|U|2124
5HKV|1|X|U|2125
5HKV|1|X|C|2126
5HKV|1|X|G|2217
5HKV|1|X|G|2218
5HKV|1|X|C|2219
5HKV|1|X|U|2220

Current chains

Chain X

23s ribosomal RNA

Nearby chains