HL_5HKV_058

3D structure

PDB id

5HKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

UGUAGUCG

Length

8 nucleotides

Bulged bases

5HKV|1|X|G|2556

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5HKV_058 not in the Motif Atlas

Homologous match to HL_5J7L_194

Geometric discrepancy: 0.1212

The information below is about HL_5J7L_194

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

5HKV|1|X|U|2555
5HKV|1|X|G|2556
5HKV|1|X|U|2557
5HKV|1|X|A|2558
5HKV|1|X|G|2559
5HKV|1|X|U|2560
5HKV|1|X|C|2561
5HKV|1|X|G|2562

Current chains

Chain X

23s ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L6